Experiment: 36hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00680 and BPHYT_RS00685 are separated by 330 nucleotides BPHYT_RS00685 and BPHYT_RS00690 are separated by 57 nucleotides BPHYT_RS00690 and BPHYT_RS00695 are separated by 164 nucleotides
BPHYT_RS00680: BPHYT_RS00680 - amidase, at 160,225 to 161,649
_RS00680
BPHYT_RS00685: BPHYT_RS00685 - transcriptional regulator, at 161,980 to 162,309
_RS00685
BPHYT_RS00690: BPHYT_RS00690 - transcriptional regulator, at 162,367 to 162,726
_RS00690
BPHYT_RS00695: BPHYT_RS00695 - branched-chain amino acid ABC transporter permease, at 162,891 to 163,766
_RS00695
Position (kb) 162
163 Strain fitness (log2 ratio) -2
-1
0
1
2 at 161.507 kb on - strand at 161.599 kb on - strand at 161.599 kb on - strand at 161.601 kb on - strand at 161.601 kb on - strand at 161.601 kb on - strand at 161.602 kb on + strand at 161.603 kb on - strand at 161.649 kb on + strand at 161.649 kb on + strand at 161.649 kb on + strand at 161.650 kb on - strand at 161.650 kb on - strand at 161.673 kb on + strand at 161.684 kb on + strand at 161.781 kb on - strand at 161.787 kb on - strand at 161.837 kb on + strand at 162.086 kb on + strand, within BPHYT_RS00685 at 162.140 kb on - strand, within BPHYT_RS00685 at 162.292 kb on - strand at 162.298 kb on - strand at 162.634 kb on - strand, within BPHYT_RS00690 at 162.730 kb on - strand at 162.890 kb on + strand at 162.890 kb on + strand at 162.891 kb on - strand at 162.918 kb on + strand at 163.207 kb on + strand, within BPHYT_RS00695 at 163.207 kb on + strand, within BPHYT_RS00695 at 163.207 kb on + strand, within BPHYT_RS00695 at 163.208 kb on - strand, within BPHYT_RS00695 at 163.208 kb on - strand, within BPHYT_RS00695 at 163.208 kb on - strand, within BPHYT_RS00695 at 163.208 kb on - strand, within BPHYT_RS00695 at 163.264 kb on + strand, within BPHYT_RS00695 at 163.489 kb on + strand, within BPHYT_RS00695 at 163.489 kb on + strand, within BPHYT_RS00695 at 163.490 kb on - strand, within BPHYT_RS00695 at 163.634 kb on - strand, within BPHYT_RS00695
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1 remove 161,507 - -0.2 161,599 - -1.2 161,599 - +0.6 161,601 - +0.9 161,601 - +0.2 161,601 - -1.0 161,602 + +0.2 161,603 - -0.3 161,649 + -0.8 161,649 + +0.5 161,649 + -0.2 161,650 - -1.0 161,650 - +0.5 161,673 + +0.5 161,684 + -1.4 161,781 - +0.3 161,787 - +1.3 161,837 + +0.0 162,086 + BPHYT_RS00685 0.32 -0.2 162,140 - BPHYT_RS00685 0.48 +0.5 162,292 - -1.5 162,298 - +0.1 162,634 - BPHYT_RS00690 0.74 -2.0 162,730 - -0.3 162,890 + +0.9 162,890 + -0.3 162,891 - -1.4 162,918 + +0.5 163,207 + BPHYT_RS00695 0.36 +2.2 163,207 + BPHYT_RS00695 0.36 +0.5 163,207 + BPHYT_RS00695 0.36 -2.0 163,208 - BPHYT_RS00695 0.36 -1.8 163,208 - BPHYT_RS00695 0.36 +1.5 163,208 - BPHYT_RS00695 0.36 -0.6 163,208 - BPHYT_RS00695 0.36 -0.3 163,264 + BPHYT_RS00695 0.43 -0.1 163,489 + BPHYT_RS00695 0.68 -0.9 163,489 + BPHYT_RS00695 0.68 -0.1 163,490 - BPHYT_RS00695 0.68 +0.2 163,634 - BPHYT_RS00695 0.85 +0.3
Or see this region's nucleotide sequence