Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00690

Experiment: 36hr PHYTO11 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00680 and BPHYT_RS00685 are separated by 330 nucleotidesBPHYT_RS00685 and BPHYT_RS00690 are separated by 57 nucleotidesBPHYT_RS00690 and BPHYT_RS00695 are separated by 164 nucleotides BPHYT_RS00680: BPHYT_RS00680 - amidase, at 160,225 to 161,649 _RS00680 BPHYT_RS00685: BPHYT_RS00685 - transcriptional regulator, at 161,980 to 162,309 _RS00685 BPHYT_RS00690: BPHYT_RS00690 - transcriptional regulator, at 162,367 to 162,726 _RS00690 BPHYT_RS00695: BPHYT_RS00695 - branched-chain amino acid ABC transporter permease, at 162,891 to 163,766 _RS00695 Position (kb) 162 163Strain fitness (log2 ratio) -2 -1 0 1 2at 161.507 kb on - strandat 161.599 kb on - strandat 161.599 kb on - strandat 161.601 kb on - strandat 161.601 kb on - strandat 161.601 kb on - strandat 161.602 kb on + strandat 161.603 kb on - strandat 161.649 kb on + strandat 161.649 kb on + strandat 161.649 kb on + strandat 161.650 kb on - strandat 161.650 kb on - strandat 161.673 kb on + strandat 161.684 kb on + strandat 161.781 kb on - strandat 161.787 kb on - strandat 161.837 kb on + strandat 162.086 kb on + strand, within BPHYT_RS00685at 162.140 kb on - strand, within BPHYT_RS00685at 162.292 kb on - strandat 162.298 kb on - strandat 162.634 kb on - strand, within BPHYT_RS00690at 162.730 kb on - strandat 162.890 kb on + strandat 162.890 kb on + strandat 162.891 kb on - strandat 162.918 kb on + strandat 163.207 kb on + strand, within BPHYT_RS00695at 163.207 kb on + strand, within BPHYT_RS00695at 163.207 kb on + strand, within BPHYT_RS00695at 163.208 kb on - strand, within BPHYT_RS00695at 163.208 kb on - strand, within BPHYT_RS00695at 163.208 kb on - strand, within BPHYT_RS00695at 163.208 kb on - strand, within BPHYT_RS00695at 163.264 kb on + strand, within BPHYT_RS00695at 163.489 kb on + strand, within BPHYT_RS00695at 163.489 kb on + strand, within BPHYT_RS00695at 163.490 kb on - strand, within BPHYT_RS00695at 163.634 kb on - strand, within BPHYT_RS00695

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1
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161,507 - -0.2
161,599 - -1.2
161,599 - +0.6
161,601 - +0.9
161,601 - +0.2
161,601 - -1.0
161,602 + +0.2
161,603 - -0.3
161,649 + -0.8
161,649 + +0.5
161,649 + -0.2
161,650 - -1.0
161,650 - +0.5
161,673 + +0.5
161,684 + -1.4
161,781 - +0.3
161,787 - +1.3
161,837 + +0.0
162,086 + BPHYT_RS00685 0.32 -0.2
162,140 - BPHYT_RS00685 0.48 +0.5
162,292 - -1.5
162,298 - +0.1
162,634 - BPHYT_RS00690 0.74 -2.0
162,730 - -0.3
162,890 + +0.9
162,890 + -0.3
162,891 - -1.4
162,918 + +0.5
163,207 + BPHYT_RS00695 0.36 +2.2
163,207 + BPHYT_RS00695 0.36 +0.5
163,207 + BPHYT_RS00695 0.36 -2.0
163,208 - BPHYT_RS00695 0.36 -1.8
163,208 - BPHYT_RS00695 0.36 +1.5
163,208 - BPHYT_RS00695 0.36 -0.6
163,208 - BPHYT_RS00695 0.36 -0.3
163,264 + BPHYT_RS00695 0.43 -0.1
163,489 + BPHYT_RS00695 0.68 -0.9
163,489 + BPHYT_RS00695 0.68 -0.1
163,490 - BPHYT_RS00695 0.68 +0.2
163,634 - BPHYT_RS00695 0.85 +0.3

Or see this region's nucleotide sequence