Experiment: 36hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00410 and BPHYT_RS00415 are separated by 173 nucleotides BPHYT_RS00415 and BPHYT_RS00420 are separated by 892 nucleotides
BPHYT_RS00410: BPHYT_RS00410 - LacI family transcription regulator, at 101,715 to 102,809
_RS00410
BPHYT_RS00415: BPHYT_RS00415 - sugar ABC transporter substrate-binding protein, at 102,983 to 104,251
_RS00415
BPHYT_RS00420: BPHYT_RS00420 - LysR family transcriptional regulator, at 105,144 to 106,013
_RS00420
Position (kb) 102
103
104
105 Strain fitness (log2 ratio) -2
-1
0
1 at 102.066 kb on + strand, within BPHYT_RS00410 at 102.268 kb on + strand, within BPHYT_RS00410 at 102.272 kb on + strand, within BPHYT_RS00410 at 102.272 kb on + strand, within BPHYT_RS00410 at 102.273 kb on - strand, within BPHYT_RS00410 at 102.273 kb on - strand, within BPHYT_RS00410 at 102.273 kb on - strand, within BPHYT_RS00410 at 102.371 kb on - strand, within BPHYT_RS00410 at 102.568 kb on + strand, within BPHYT_RS00410 at 102.569 kb on - strand, within BPHYT_RS00410 at 102.709 kb on - strand at 103.379 kb on + strand, within BPHYT_RS00415 at 103.391 kb on + strand, within BPHYT_RS00415 at 103.392 kb on - strand, within BPHYT_RS00415 at 103.392 kb on - strand, within BPHYT_RS00415 at 103.392 kb on - strand, within BPHYT_RS00415 at 103.707 kb on - strand, within BPHYT_RS00415 at 103.709 kb on - strand, within BPHYT_RS00415 at 103.844 kb on + strand, within BPHYT_RS00415 at 103.844 kb on + strand, within BPHYT_RS00415 at 103.845 kb on - strand, within BPHYT_RS00415 at 103.845 kb on - strand, within BPHYT_RS00415 at 103.855 kb on - strand, within BPHYT_RS00415 at 103.882 kb on + strand, within BPHYT_RS00415 at 103.882 kb on + strand, within BPHYT_RS00415 at 103.883 kb on - strand, within BPHYT_RS00415 at 103.970 kb on - strand, within BPHYT_RS00415 at 103.989 kb on + strand, within BPHYT_RS00415 at 104.138 kb on - strand at 104.439 kb on - strand at 104.439 kb on - strand at 104.661 kb on - strand at 104.725 kb on + strand at 104.726 kb on - strand at 104.797 kb on + strand at 104.797 kb on + strand at 104.835 kb on + strand at 104.836 kb on - strand at 104.863 kb on + strand at 104.877 kb on - strand at 104.877 kb on - strand at 104.877 kb on - strand at 104.880 kb on + strand at 104.881 kb on - strand at 104.888 kb on + strand at 104.889 kb on - strand at 104.906 kb on + strand at 104.907 kb on - strand at 105.060 kb on + strand at 105.208 kb on + strand at 105.208 kb on + strand at 105.208 kb on + strand at 105.209 kb on - strand at 105.209 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1 remove 102,066 + BPHYT_RS00410 0.32 +0.4 102,268 + BPHYT_RS00410 0.51 +0.2 102,272 + BPHYT_RS00410 0.51 -0.6 102,272 + BPHYT_RS00410 0.51 +0.0 102,273 - BPHYT_RS00410 0.51 +0.9 102,273 - BPHYT_RS00410 0.51 +0.2 102,273 - BPHYT_RS00410 0.51 +0.4 102,371 - BPHYT_RS00410 0.60 -0.3 102,568 + BPHYT_RS00410 0.78 +0.3 102,569 - BPHYT_RS00410 0.78 -0.7 102,709 - -0.0 103,379 + BPHYT_RS00415 0.31 +0.1 103,391 + BPHYT_RS00415 0.32 -2.0 103,392 - BPHYT_RS00415 0.32 +1.1 103,392 - BPHYT_RS00415 0.32 -0.1 103,392 - BPHYT_RS00415 0.32 +0.0 103,707 - BPHYT_RS00415 0.57 -1.0 103,709 - BPHYT_RS00415 0.57 +1.4 103,844 + BPHYT_RS00415 0.68 +0.6 103,844 + BPHYT_RS00415 0.68 -0.8 103,845 - BPHYT_RS00415 0.68 +0.1 103,845 - BPHYT_RS00415 0.68 +0.9 103,855 - BPHYT_RS00415 0.69 -0.3 103,882 + BPHYT_RS00415 0.71 -0.4 103,882 + BPHYT_RS00415 0.71 +0.4 103,883 - BPHYT_RS00415 0.71 +0.3 103,970 - BPHYT_RS00415 0.78 -0.9 103,989 + BPHYT_RS00415 0.79 -0.4 104,138 - -0.1 104,439 - -0.7 104,439 - +1.0 104,661 - -0.6 104,725 + +0.9 104,726 - +1.5 104,797 + -1.3 104,797 + -0.8 104,835 + +0.2 104,836 - +0.2 104,863 + +0.9 104,877 - -0.1 104,877 - -0.2 104,877 - -1.1 104,880 + -0.2 104,881 - +0.5 104,888 + -0.2 104,889 - -0.1 104,906 + +1.1 104,907 - -0.8 105,060 + -0.9 105,208 + -0.0 105,208 + -0.0 105,208 + -2.4 105,209 - -0.2 105,209 - +0.2
Or see this region's nucleotide sequence