Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00345

Experiment: 36hr PHYTO11 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00335 and BPHYT_RS00340 are separated by 16 nucleotidesBPHYT_RS00340 and BPHYT_RS00345 are separated by 223 nucleotidesBPHYT_RS00345 and BPHYT_RS00350 are separated by 312 nucleotides BPHYT_RS00335: BPHYT_RS00335 - peptidase M19, at 84,101 to 85,099 _RS00335 BPHYT_RS00340: BPHYT_RS00340 - hypothetical protein, at 85,116 to 85,709 _RS00340 BPHYT_RS00345: BPHYT_RS00345 - MFS transporter, at 85,933 to 87,156 _RS00345 BPHYT_RS00350: BPHYT_RS00350 - hypothetical protein, at 87,469 to 88,155 _RS00350 Position (kb) 85 86 87 88Strain fitness (log2 ratio) -1 0 1 2 3 4at 84.956 kb on - strand, within BPHYT_RS00335at 84.986 kb on - strand, within BPHYT_RS00335at 85.134 kb on - strandat 85.134 kb on - strandat 85.230 kb on - strand, within BPHYT_RS00340at 85.466 kb on - strand, within BPHYT_RS00340at 85.603 kb on - strand, within BPHYT_RS00340at 85.777 kb on + strandat 85.777 kb on + strandat 85.778 kb on - strandat 85.786 kb on - strandat 85.927 kb on - strandat 85.934 kb on + strandat 85.951 kb on - strandat 85.951 kb on - strandat 86.086 kb on + strand, within BPHYT_RS00345at 86.087 kb on - strand, within BPHYT_RS00345at 86.110 kb on - strand, within BPHYT_RS00345at 86.238 kb on + strand, within BPHYT_RS00345at 86.239 kb on - strand, within BPHYT_RS00345at 86.246 kb on + strand, within BPHYT_RS00345at 86.259 kb on + strand, within BPHYT_RS00345at 86.260 kb on - strand, within BPHYT_RS00345at 86.332 kb on + strand, within BPHYT_RS00345at 86.383 kb on + strand, within BPHYT_RS00345at 86.443 kb on + strand, within BPHYT_RS00345at 86.527 kb on + strand, within BPHYT_RS00345at 86.527 kb on + strand, within BPHYT_RS00345at 86.672 kb on - strand, within BPHYT_RS00345at 86.672 kb on - strand, within BPHYT_RS00345at 86.698 kb on + strand, within BPHYT_RS00345at 86.698 kb on + strand, within BPHYT_RS00345at 86.728 kb on + strand, within BPHYT_RS00345at 86.729 kb on - strand, within BPHYT_RS00345at 86.912 kb on + strand, within BPHYT_RS00345at 86.913 kb on - strand, within BPHYT_RS00345at 86.916 kb on - strand, within BPHYT_RS00345at 86.916 kb on - strand, within BPHYT_RS00345at 86.941 kb on + strand, within BPHYT_RS00345at 86.942 kb on - strand, within BPHYT_RS00345at 87.022 kb on - strand, within BPHYT_RS00345at 87.025 kb on + strand, within BPHYT_RS00345at 87.032 kb on + strand, within BPHYT_RS00345at 87.033 kb on - strand, within BPHYT_RS00345at 87.118 kb on + strandat 87.119 kb on - strandat 87.210 kb on - strandat 87.484 kb on + strandat 87.485 kb on - strandat 87.549 kb on + strand, within BPHYT_RS00350at 87.738 kb on - strand, within BPHYT_RS00350at 87.910 kb on - strand, within BPHYT_RS00350at 88.010 kb on + strand, within BPHYT_RS00350

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1
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84,956 - BPHYT_RS00335 0.86 +0.1
84,986 - BPHYT_RS00335 0.89 +4.1
85,134 - -0.6
85,134 - +0.4
85,230 - BPHYT_RS00340 0.19 +0.3
85,466 - BPHYT_RS00340 0.59 +1.3
85,603 - BPHYT_RS00340 0.82 +0.1
85,777 + +1.5
85,777 + -1.4
85,778 - +1.4
85,786 - -0.2
85,927 - -0.9
85,934 + -0.3
85,951 - -1.1
85,951 - -0.5
86,086 + BPHYT_RS00345 0.12 +0.5
86,087 - BPHYT_RS00345 0.13 +1.5
86,110 - BPHYT_RS00345 0.14 -0.3
86,238 + BPHYT_RS00345 0.25 -1.3
86,239 - BPHYT_RS00345 0.25 -0.1
86,246 + BPHYT_RS00345 0.26 -0.9
86,259 + BPHYT_RS00345 0.27 +0.7
86,260 - BPHYT_RS00345 0.27 -1.7
86,332 + BPHYT_RS00345 0.33 -0.7
86,383 + BPHYT_RS00345 0.37 -0.5
86,443 + BPHYT_RS00345 0.42 -0.2
86,527 + BPHYT_RS00345 0.49 +0.2
86,527 + BPHYT_RS00345 0.49 -0.5
86,672 - BPHYT_RS00345 0.60 -0.6
86,672 - BPHYT_RS00345 0.60 -0.8
86,698 + BPHYT_RS00345 0.62 -1.5
86,698 + BPHYT_RS00345 0.62 +1.3
86,728 + BPHYT_RS00345 0.65 -0.2
86,729 - BPHYT_RS00345 0.65 -0.1
86,912 + BPHYT_RS00345 0.80 -1.1
86,913 - BPHYT_RS00345 0.80 +0.5
86,916 - BPHYT_RS00345 0.80 +0.2
86,916 - BPHYT_RS00345 0.80 +0.8
86,941 + BPHYT_RS00345 0.82 -0.5
86,942 - BPHYT_RS00345 0.82 -1.6
87,022 - BPHYT_RS00345 0.89 +0.1
87,025 + BPHYT_RS00345 0.89 -0.5
87,032 + BPHYT_RS00345 0.90 -0.0
87,033 - BPHYT_RS00345 0.90 -0.4
87,118 + -1.0
87,119 - +1.5
87,210 - +0.6
87,484 + -0.5
87,485 - -1.1
87,549 + BPHYT_RS00350 0.12 -0.3
87,738 - BPHYT_RS00350 0.39 -0.3
87,910 - BPHYT_RS00350 0.64 +1.8
88,010 + BPHYT_RS00350 0.79 +1.3

Or see this region's nucleotide sequence