Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32360
Experiment: 36hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO11 MOI 1 |
---|---|---|---|---|---|
remove | |||||
2,830,113 | + | +0.1 | |||
2,830,992 | + | +0.8 | |||
2,831,339 | - | BPHYT_RS32360 | 0.28 | -0.3 | |
2,832,096 | + | +0.2 | |||
2,832,141 | - | -0.9 | |||
2,832,402 | - | BPHYT_RS32365 | 0.20 | -0.9 | |
2,832,503 | - | BPHYT_RS32365 | 0.29 | +0.8 | |
2,832,880 | + | BPHYT_RS32365 | 0.64 | +1.0 | |
2,832,880 | + | BPHYT_RS32365 | 0.64 | -0.2 | |
2,832,897 | - | BPHYT_RS32365 | 0.66 | -0.9 |
Or see this region's nucleotide sequence