Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28405

Experiment: 36hr PHYTO11 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS28405 and BPHYT_RS28410 are separated by 4 nucleotides BPHYT_RS28405: BPHYT_RS28405 - membrane protein, at 1,926,436 to 1,927,824 _RS28405 BPHYT_RS28410: BPHYT_RS28410 - ubiquinol oxidase subunit II, cyanide insensitive, at 1,927,829 to 1,928,836 _RS28410 Position (kb) 1926 1927 1928Strain fitness (log2 ratio) -1 0 1 2at 1925.534 kb on - strandat 1925.850 kb on + strandat 1926.030 kb on + strandat 1926.595 kb on + strand, within BPHYT_RS28405at 1926.829 kb on - strand, within BPHYT_RS28405at 1927.139 kb on + strand, within BPHYT_RS28405at 1927.443 kb on - strand, within BPHYT_RS28405at 1927.489 kb on + strand, within BPHYT_RS28405at 1927.882 kb on + strandat 1928.078 kb on + strand, within BPHYT_RS28410at 1928.079 kb on - strand, within BPHYT_RS28410at 1928.227 kb on - strand, within BPHYT_RS28410at 1928.808 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1
remove
1,925,534 - +0.5
1,925,850 + -0.8
1,926,030 + -1.5
1,926,595 + BPHYT_RS28405 0.11 +1.2
1,926,829 - BPHYT_RS28405 0.28 +1.8
1,927,139 + BPHYT_RS28405 0.51 +0.1
1,927,443 - BPHYT_RS28405 0.72 +0.7
1,927,489 + BPHYT_RS28405 0.76 +1.2
1,927,882 + +2.4
1,928,078 + BPHYT_RS28410 0.25 +0.2
1,928,079 - BPHYT_RS28410 0.25 +2.3
1,928,227 - BPHYT_RS28410 0.39 +1.2
1,928,808 + +1.0

Or see this region's nucleotide sequence