Experiment: 36hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS27060 and BPHYT_RS27065 are separated by 162 nucleotides BPHYT_RS27065 and BPHYT_RS27070 are separated by 91 nucleotides BPHYT_RS27070 and BPHYT_RS27075 are separated by 66 nucleotides BPHYT_RS27075 and BPHYT_RS27080 overlap by 4 nucleotides
BPHYT_RS27060: BPHYT_RS27060 - photosystem reaction center subunit H, at 1,645,414 to 1,645,911
_RS27060
BPHYT_RS27065: BPHYT_RS27065 - hypothetical protein, at 1,646,074 to 1,646,463
_RS27065
BPHYT_RS27070: BPHYT_RS27070 - cation transporter, at 1,646,555 to 1,647,874
_RS27070
BPHYT_RS27075: BPHYT_RS27075 - membrane protein, at 1,647,941 to 1,648,510
_RS27075
BPHYT_RS27080: BPHYT_RS27080 - AraC family transcriptional regulator, at 1,648,507 to 1,649,478
_RS27080
Position (kb) 1646
1647
1648 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1645.792 kb on + strand, within BPHYT_RS27060 at 1645.795 kb on + strand, within BPHYT_RS27060 at 1645.796 kb on - strand, within BPHYT_RS27060 at 1646.367 kb on + strand, within BPHYT_RS27065 at 1646.603 kb on - strand at 1646.740 kb on + strand, within BPHYT_RS27070 at 1646.741 kb on - strand, within BPHYT_RS27070 at 1647.307 kb on + strand, within BPHYT_RS27070 at 1647.308 kb on - strand, within BPHYT_RS27070 at 1647.311 kb on + strand, within BPHYT_RS27070 at 1647.311 kb on + strand, within BPHYT_RS27070 at 1647.312 kb on - strand, within BPHYT_RS27070 at 1647.461 kb on + strand, within BPHYT_RS27070 at 1647.461 kb on + strand, within BPHYT_RS27070 at 1647.463 kb on + strand, within BPHYT_RS27070 at 1647.716 kb on + strand, within BPHYT_RS27070 at 1647.719 kb on + strand, within BPHYT_RS27070 at 1647.884 kb on + strand at 1648.166 kb on + strand at 1648.166 kb on + strand, within BPHYT_RS27075 at 1648.166 kb on + strand, within BPHYT_RS27075 at 1648.167 kb on - strand, within BPHYT_RS27075 at 1648.167 kb on - strand, within BPHYT_RS27075 at 1648.271 kb on + strand, within BPHYT_RS27075 at 1648.508 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1 remove 1,645,792 + BPHYT_RS27060 0.76 -1.3 1,645,795 + BPHYT_RS27060 0.77 -0.1 1,645,796 - BPHYT_RS27060 0.77 -0.8 1,646,367 + BPHYT_RS27065 0.75 -0.4 1,646,603 - +0.1 1,646,740 + BPHYT_RS27070 0.14 -0.2 1,646,741 - BPHYT_RS27070 0.14 -0.6 1,647,307 + BPHYT_RS27070 0.57 +0.7 1,647,308 - BPHYT_RS27070 0.57 -2.9 1,647,311 + BPHYT_RS27070 0.57 -0.4 1,647,311 + BPHYT_RS27070 0.57 +0.4 1,647,312 - BPHYT_RS27070 0.57 +0.1 1,647,461 + BPHYT_RS27070 0.69 -0.0 1,647,461 + BPHYT_RS27070 0.69 -0.0 1,647,463 + BPHYT_RS27070 0.69 -0.5 1,647,716 + BPHYT_RS27070 0.88 -1.0 1,647,719 + BPHYT_RS27070 0.88 -0.3 1,647,884 + -1.2 1,648,166 + +0.8 1,648,166 + BPHYT_RS27075 0.39 -0.8 1,648,166 + BPHYT_RS27075 0.39 -0.2 1,648,167 - BPHYT_RS27075 0.40 -0.9 1,648,167 - BPHYT_RS27075 0.40 -0.2 1,648,271 + BPHYT_RS27075 0.58 +0.4 1,648,508 + -0.9
Or see this region's nucleotide sequence