Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25570

Experiment: 36hr PHYTO11 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25560 and BPHYT_RS25565 overlap by 4 nucleotidesBPHYT_RS25565 and BPHYT_RS25570 are separated by 272 nucleotidesBPHYT_RS25570 and BPHYT_RS25575 are separated by 495 nucleotides BPHYT_RS25560: BPHYT_RS25560 - RNA polymerase sigma factor, at 1,307,661 to 1,308,233 _RS25560 BPHYT_RS25565: BPHYT_RS25565 - hypothetical protein, at 1,308,230 to 1,308,871 _RS25565 BPHYT_RS25570: BPHYT_RS25570 - hypothetical protein, at 1,309,144 to 1,309,389 _RS25570 BPHYT_RS25575: BPHYT_RS25575 - alpha/beta hydrolase, at 1,309,885 to 1,310,751 _RS25575 Position (kb) 1309 1310Strain fitness (log2 ratio) -1 0 1at 1308.616 kb on - strand, within BPHYT_RS25565at 1308.626 kb on - strand, within BPHYT_RS25565at 1308.862 kb on - strandat 1308.964 kb on - strandat 1309.536 kb on - strandat 1309.872 kb on + strandat 1310.071 kb on - strand, within BPHYT_RS25575

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1
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1,308,616 - BPHYT_RS25565 0.60 +0.5
1,308,626 - BPHYT_RS25565 0.62 +0.3
1,308,862 - +0.8
1,308,964 - +0.0
1,309,536 - +0.4
1,309,872 + -0.3
1,310,071 - BPHYT_RS25575 0.21 +0.1

Or see this region's nucleotide sequence