Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25550

Experiment: 36hr PHYTO11 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25545 and BPHYT_RS25550 are separated by 188 nucleotidesBPHYT_RS25550 and BPHYT_RS25555 are separated by 272 nucleotides BPHYT_RS25545: BPHYT_RS25545 - hypothetical protein, at 1,303,786 to 1,305,726 _RS25545 BPHYT_RS25550: BPHYT_RS25550 - hypothetical protein, at 1,305,915 to 1,306,607 _RS25550 BPHYT_RS25555: BPHYT_RS25555 - alkyl hydroperoxide reductase, at 1,306,880 to 1,307,560 _RS25555 Position (kb) 1305 1306 1307Strain fitness (log2 ratio) -1 0 1at 1305.468 kb on + strand, within BPHYT_RS25545at 1305.468 kb on + strand, within BPHYT_RS25545at 1305.501 kb on - strand, within BPHYT_RS25545at 1306.941 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1
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1,305,468 + BPHYT_RS25545 0.87 -0.8
1,305,468 + BPHYT_RS25545 0.87 +0.3
1,305,501 - BPHYT_RS25545 0.88 -1.7
1,306,941 - +0.7

Or see this region's nucleotide sequence