Experiment: 36hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23100 and BPHYT_RS23105 are separated by 81 nucleotides BPHYT_RS23105 and BPHYT_RS23110 are separated by 228 nucleotides BPHYT_RS23110 and BPHYT_RS23115 are separated by 197 nucleotides
BPHYT_RS23100: BPHYT_RS23100 - sugar ABC transporter substrate-binding protein, at 746,386 to 747,333
_RS23100
BPHYT_RS23105: BPHYT_RS23105 - DNA polymerase, at 747,415 to 749,790
_RS23105
BPHYT_RS23110: BPHYT_RS23110 - photosystem reaction center subunit H, at 750,019 to 750,444
_RS23110
BPHYT_RS23115: BPHYT_RS23115 - hypothetical protein, at 750,642 to 751,652
_RS23115
Position (kb) 747
748
749
750 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 746.512 kb on + strand, within BPHYT_RS23100 at 746.513 kb on - strand, within BPHYT_RS23100 at 747.406 kb on - strand at 747.578 kb on + strand at 747.579 kb on - strand at 747.579 kb on - strand at 747.874 kb on - strand, within BPHYT_RS23105 at 747.876 kb on - strand, within BPHYT_RS23105 at 748.057 kb on - strand, within BPHYT_RS23105 at 748.145 kb on + strand, within BPHYT_RS23105 at 748.146 kb on - strand, within BPHYT_RS23105 at 748.147 kb on + strand, within BPHYT_RS23105 at 748.320 kb on + strand, within BPHYT_RS23105 at 748.321 kb on - strand, within BPHYT_RS23105 at 748.641 kb on + strand, within BPHYT_RS23105 at 748.644 kb on - strand, within BPHYT_RS23105 at 748.644 kb on - strand, within BPHYT_RS23105 at 748.781 kb on + strand, within BPHYT_RS23105 at 748.781 kb on + strand, within BPHYT_RS23105 at 749.238 kb on - strand, within BPHYT_RS23105 at 749.444 kb on + strand, within BPHYT_RS23105 at 749.475 kb on - strand, within BPHYT_RS23105 at 749.944 kb on + strand at 749.944 kb on + strand at 749.945 kb on - strand at 750.004 kb on - strand at 750.181 kb on + strand, within BPHYT_RS23110 at 750.358 kb on - strand, within BPHYT_RS23110 at 750.581 kb on - strand at 750.639 kb on + strand at 750.640 kb on - strand at 750.692 kb on + strand at 750.692 kb on + strand at 750.694 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1 remove 746,512 + BPHYT_RS23100 0.13 -1.1 746,513 - BPHYT_RS23100 0.13 -3.5 747,406 - -0.4 747,578 + -0.1 747,579 - -1.5 747,579 - -0.6 747,874 - BPHYT_RS23105 0.19 +2.3 747,876 - BPHYT_RS23105 0.19 -0.5 748,057 - BPHYT_RS23105 0.27 -1.3 748,145 + BPHYT_RS23105 0.31 -1.1 748,146 - BPHYT_RS23105 0.31 -0.1 748,147 + BPHYT_RS23105 0.31 -1.0 748,320 + BPHYT_RS23105 0.38 -0.0 748,321 - BPHYT_RS23105 0.38 -0.9 748,641 + BPHYT_RS23105 0.52 -0.8 748,644 - BPHYT_RS23105 0.52 +0.3 748,644 - BPHYT_RS23105 0.52 -0.7 748,781 + BPHYT_RS23105 0.57 -1.0 748,781 + BPHYT_RS23105 0.57 -0.3 749,238 - BPHYT_RS23105 0.77 -0.8 749,444 + BPHYT_RS23105 0.85 -0.3 749,475 - BPHYT_RS23105 0.87 +0.4 749,944 + -1.3 749,944 + -2.8 749,945 - +0.1 750,004 - +1.2 750,181 + BPHYT_RS23110 0.38 +1.4 750,358 - BPHYT_RS23110 0.80 -0.2 750,581 - -2.2 750,639 + +0.1 750,640 - +0.2 750,692 + -0.7 750,692 + +2.4 750,694 + -0.6
Or see this region's nucleotide sequence