Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23095

Experiment: 36hr PHYTO11 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23085 and BPHYT_RS23090 are separated by 33 nucleotidesBPHYT_RS23090 and BPHYT_RS23095 are separated by 37 nucleotidesBPHYT_RS23095 and BPHYT_RS23100 are separated by 26 nucleotides BPHYT_RS23085: BPHYT_RS23085 - MFS transporter, at 743,089 to 744,501 _RS23085 BPHYT_RS23090: BPHYT_RS23090 - histidine kinase, at 744,535 to 745,089 _RS23090 BPHYT_RS23095: BPHYT_RS23095 - MFS transporter, at 745,127 to 746,359 _RS23095 BPHYT_RS23100: BPHYT_RS23100 - sugar ABC transporter substrate-binding protein, at 746,386 to 747,333 _RS23100 Position (kb) 745 746 747Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 744.202 kb on + strand, within BPHYT_RS23085at 744.203 kb on - strand, within BPHYT_RS23085at 744.209 kb on - strand, within BPHYT_RS23085at 744.915 kb on - strand, within BPHYT_RS23090at 745.221 kb on - strandat 745.221 kb on - strandat 745.508 kb on + strand, within BPHYT_RS23095at 745.634 kb on + strand, within BPHYT_RS23095at 745.868 kb on + strand, within BPHYT_RS23095at 745.929 kb on - strand, within BPHYT_RS23095at 746.186 kb on - strand, within BPHYT_RS23095at 746.330 kb on + strandat 746.387 kb on + strandat 746.388 kb on - strandat 746.388 kb on - strandat 746.512 kb on + strand, within BPHYT_RS23100at 746.513 kb on - strand, within BPHYT_RS23100

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1
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744,202 + BPHYT_RS23085 0.79 +0.4
744,203 - BPHYT_RS23085 0.79 +0.4
744,209 - BPHYT_RS23085 0.79 +1.0
744,915 - BPHYT_RS23090 0.68 -0.7
745,221 - +2.8
745,221 - -1.7
745,508 + BPHYT_RS23095 0.31 +2.1
745,634 + BPHYT_RS23095 0.41 -0.1
745,868 + BPHYT_RS23095 0.60 +0.3
745,929 - BPHYT_RS23095 0.65 -0.3
746,186 - BPHYT_RS23095 0.86 -0.6
746,330 + -0.7
746,387 + -0.5
746,388 - +0.2
746,388 - +1.2
746,512 + BPHYT_RS23100 0.13 -1.1
746,513 - BPHYT_RS23100 0.13 -3.5

Or see this region's nucleotide sequence