Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21815

Experiment: 36hr PHYTO11 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21810 and BPHYT_RS21815 are separated by 69 nucleotidesBPHYT_RS21815 and BPHYT_RS21820 are separated by 290 nucleotidesBPHYT_RS21820 and BPHYT_RS21825 are separated by 384 nucleotides BPHYT_RS21810: BPHYT_RS21810 - histidine kinase, at 448,770 to 450,215 _RS21810 BPHYT_RS21815: BPHYT_RS21815 - hypothetical protein, at 450,285 to 450,557 _RS21815 BPHYT_RS21820: BPHYT_RS21820 - hypothetical protein, at 450,848 to 451,132 _RS21820 BPHYT_RS21825: BPHYT_RS21825 - chemotaxis protein CheY, at 451,517 to 451,903 _RS21825 Position (kb) 450 451Strain fitness (log2 ratio) -1 0 1at 449.319 kb on + strand, within BPHYT_RS21810at 449.320 kb on - strand, within BPHYT_RS21810at 449.989 kb on + strand, within BPHYT_RS21810at 449.989 kb on + strand, within BPHYT_RS21810at 449.990 kb on - strand, within BPHYT_RS21810at 450.358 kb on - strand, within BPHYT_RS21815at 450.860 kb on - strandat 451.143 kb on - strandat 451.192 kb on + strandat 451.403 kb on + strandat 451.536 kb on + strandat 451.537 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1
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449,319 + BPHYT_RS21810 0.38 +0.8
449,320 - BPHYT_RS21810 0.38 +1.4
449,989 + BPHYT_RS21810 0.84 -0.1
449,989 + BPHYT_RS21810 0.84 -0.7
449,990 - BPHYT_RS21810 0.84 +0.5
450,358 - BPHYT_RS21815 0.27 +1.0
450,860 - -0.4
451,143 - -0.4
451,192 + -0.8
451,403 + -0.2
451,536 + -0.4
451,537 - +0.2

Or see this region's nucleotide sequence