Experiment: 36hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19070 and BPHYT_RS19075 are separated by 219 nucleotides BPHYT_RS19075 and BPHYT_RS19080 are separated by 362 nucleotides BPHYT_RS19080 and BPHYT_RS19085 are separated by 268 nucleotides
BPHYT_RS19070: BPHYT_RS19070 - hypothetical protein, at 4,279,813 to 4,280,238
_RS19070
BPHYT_RS19075: BPHYT_RS19075 - 30S ribosomal protein S21 1, at 4,280,458 to 4,280,670
_RS19075
BPHYT_RS19080: BPHYT_RS19080 - NADP-dependent aryl-alcohol dehydrogenase, at 4,281,033 to 4,281,974
_RS19080
BPHYT_RS19085: BPHYT_RS19085 - flagellin, at 4,282,243 to 4,283,388
_RS19085
Position (kb)
4281
4282 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4280.038 kb on + strand, within BPHYT_RS19070 at 4280.041 kb on - strand, within BPHYT_RS19070 at 4280.041 kb on - strand, within BPHYT_RS19070 at 4280.098 kb on + strand, within BPHYT_RS19070 at 4280.098 kb on + strand, within BPHYT_RS19070 at 4280.099 kb on - strand, within BPHYT_RS19070 at 4280.236 kb on + strand at 4280.245 kb on + strand at 4280.245 kb on + strand at 4280.245 kb on + strand at 4280.260 kb on + strand at 4280.260 kb on + strand at 4280.263 kb on + strand at 4280.264 kb on - strand at 4280.298 kb on + strand at 4280.298 kb on + strand at 4280.304 kb on + strand at 4280.305 kb on - strand at 4280.305 kb on - strand at 4280.338 kb on + strand at 4280.338 kb on + strand at 4280.338 kb on + strand at 4280.339 kb on - strand at 4280.460 kb on - strand at 4280.460 kb on - strand at 4280.460 kb on - strand at 4281.024 kb on - strand at 4281.137 kb on + strand, within BPHYT_RS19080 at 4281.259 kb on + strand, within BPHYT_RS19080 at 4281.287 kb on + strand, within BPHYT_RS19080 at 4281.287 kb on + strand, within BPHYT_RS19080 at 4281.288 kb on - strand, within BPHYT_RS19080 at 4281.313 kb on + strand, within BPHYT_RS19080 at 4281.314 kb on - strand, within BPHYT_RS19080 at 4281.314 kb on - strand, within BPHYT_RS19080 at 4281.346 kb on + strand, within BPHYT_RS19080 at 4281.346 kb on + strand, within BPHYT_RS19080 at 4281.346 kb on + strand, within BPHYT_RS19080 at 4281.346 kb on + strand, within BPHYT_RS19080 at 4281.346 kb on + strand, within BPHYT_RS19080 at 4281.347 kb on - strand, within BPHYT_RS19080 at 4281.347 kb on - strand, within BPHYT_RS19080 at 4281.347 kb on - strand, within BPHYT_RS19080 at 4281.347 kb on - strand, within BPHYT_RS19080 at 4281.347 kb on - strand, within BPHYT_RS19080 at 4281.349 kb on + strand, within BPHYT_RS19080 at 4281.349 kb on + strand, within BPHYT_RS19080 at 4281.349 kb on + strand, within BPHYT_RS19080 at 4281.349 kb on + strand, within BPHYT_RS19080 at 4281.350 kb on - strand, within BPHYT_RS19080 at 4281.350 kb on - strand, within BPHYT_RS19080 at 4281.403 kb on + strand, within BPHYT_RS19080 at 4281.419 kb on - strand, within BPHYT_RS19080 at 4281.419 kb on - strand, within BPHYT_RS19080 at 4281.428 kb on - strand, within BPHYT_RS19080 at 4281.428 kb on - strand, within BPHYT_RS19080 at 4281.449 kb on - strand, within BPHYT_RS19080 at 4281.508 kb on + strand, within BPHYT_RS19080 at 4281.509 kb on - strand, within BPHYT_RS19080 at 4281.560 kb on - strand, within BPHYT_RS19080 at 4281.560 kb on - strand, within BPHYT_RS19080 at 4281.613 kb on + strand, within BPHYT_RS19080 at 4281.614 kb on - strand, within BPHYT_RS19080 at 4281.625 kb on + strand, within BPHYT_RS19080 at 4281.669 kb on + strand, within BPHYT_RS19080 at 4281.669 kb on + strand, within BPHYT_RS19080 at 4281.669 kb on + strand, within BPHYT_RS19080 at 4281.670 kb on - strand, within BPHYT_RS19080 at 4281.670 kb on - strand, within BPHYT_RS19080 at 4281.670 kb on - strand, within BPHYT_RS19080 at 4281.818 kb on - strand, within BPHYT_RS19080 at 4281.837 kb on - strand, within BPHYT_RS19080 at 4281.926 kb on + strand at 4282.012 kb on - strand at 4282.028 kb on - strand at 4282.049 kb on + strand at 4282.083 kb on - strand at 4282.103 kb on + strand at 4282.103 kb on + strand at 4282.104 kb on - strand at 4282.119 kb on + strand at 4282.119 kb on + strand at 4282.211 kb on - strand at 4282.227 kb on - strand at 4282.227 kb on - strand at 4282.230 kb on + strand at 4282.231 kb on - strand at 4282.231 kb on - strand at 4282.257 kb on + strand at 4282.258 kb on - strand at 4282.294 kb on - strand at 4282.398 kb on + strand, within BPHYT_RS19085 at 4282.512 kb on + strand, within BPHYT_RS19085 at 4282.633 kb on + strand, within BPHYT_RS19085 at 4282.819 kb on + strand, within BPHYT_RS19085 at 4282.819 kb on + strand, within BPHYT_RS19085 at 4282.842 kb on + strand, within BPHYT_RS19085 at 4282.879 kb on + strand, within BPHYT_RS19085 at 4282.880 kb on - strand, within BPHYT_RS19085
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1 remove 4,280,038 + BPHYT_RS19070 0.53 -0.9 4,280,041 - BPHYT_RS19070 0.54 +1.3 4,280,041 - BPHYT_RS19070 0.54 -0.4 4,280,098 + BPHYT_RS19070 0.67 +0.5 4,280,098 + BPHYT_RS19070 0.67 -0.1 4,280,099 - BPHYT_RS19070 0.67 -0.5 4,280,236 + +0.8 4,280,245 + -0.6 4,280,245 + -0.2 4,280,245 + -0.8 4,280,260 + -0.6 4,280,260 + +0.9 4,280,263 + -0.5 4,280,264 - +0.3 4,280,298 + -0.2 4,280,298 + -0.6 4,280,304 + -0.1 4,280,305 - +0.3 4,280,305 - +2.2 4,280,338 + -0.5 4,280,338 + -0.1 4,280,338 + -1.4 4,280,339 - -0.2 4,280,460 - +2.1 4,280,460 - +1.9 4,280,460 - +2.0 4,281,024 - +0.8 4,281,137 + BPHYT_RS19080 0.11 -0.8 4,281,259 + BPHYT_RS19080 0.24 -0.1 4,281,287 + BPHYT_RS19080 0.27 -0.2 4,281,287 + BPHYT_RS19080 0.27 -0.6 4,281,288 - BPHYT_RS19080 0.27 +0.2 4,281,313 + BPHYT_RS19080 0.30 +0.1 4,281,314 - BPHYT_RS19080 0.30 +0.5 4,281,314 - BPHYT_RS19080 0.30 -0.9 4,281,346 + BPHYT_RS19080 0.33 +0.2 4,281,346 + BPHYT_RS19080 0.33 +1.5 4,281,346 + BPHYT_RS19080 0.33 -0.9 4,281,346 + BPHYT_RS19080 0.33 +0.8 4,281,346 + BPHYT_RS19080 0.33 +0.0 4,281,347 - BPHYT_RS19080 0.33 -0.5 4,281,347 - BPHYT_RS19080 0.33 +0.6 4,281,347 - BPHYT_RS19080 0.33 -0.7 4,281,347 - BPHYT_RS19080 0.33 -0.9 4,281,347 - BPHYT_RS19080 0.33 -0.1 4,281,349 + BPHYT_RS19080 0.34 -0.0 4,281,349 + BPHYT_RS19080 0.34 -0.4 4,281,349 + BPHYT_RS19080 0.34 +1.9 4,281,349 + BPHYT_RS19080 0.34 +1.4 4,281,350 - BPHYT_RS19080 0.34 +0.3 4,281,350 - BPHYT_RS19080 0.34 -0.9 4,281,403 + BPHYT_RS19080 0.39 +0.2 4,281,419 - BPHYT_RS19080 0.41 -0.5 4,281,419 - BPHYT_RS19080 0.41 +0.2 4,281,428 - BPHYT_RS19080 0.42 -0.1 4,281,428 - BPHYT_RS19080 0.42 -0.1 4,281,449 - BPHYT_RS19080 0.44 +0.5 4,281,508 + BPHYT_RS19080 0.50 -0.5 4,281,509 - BPHYT_RS19080 0.51 -1.3 4,281,560 - BPHYT_RS19080 0.56 -0.1 4,281,560 - BPHYT_RS19080 0.56 -2.6 4,281,613 + BPHYT_RS19080 0.62 +1.7 4,281,614 - BPHYT_RS19080 0.62 +0.5 4,281,625 + BPHYT_RS19080 0.63 +1.5 4,281,669 + BPHYT_RS19080 0.68 -0.4 4,281,669 + BPHYT_RS19080 0.68 -0.1 4,281,669 + BPHYT_RS19080 0.68 -1.4 4,281,670 - BPHYT_RS19080 0.68 -0.1 4,281,670 - BPHYT_RS19080 0.68 +0.6 4,281,670 - BPHYT_RS19080 0.68 -0.1 4,281,818 - BPHYT_RS19080 0.83 +1.5 4,281,837 - BPHYT_RS19080 0.85 -1.7 4,281,926 + +0.4 4,282,012 - +0.5 4,282,028 - -0.5 4,282,049 + -0.1 4,282,083 - -1.9 4,282,103 + -0.4 4,282,103 + +0.2 4,282,104 - -0.6 4,282,119 + -0.2 4,282,119 + -0.2 4,282,211 - -0.6 4,282,227 - +0.2 4,282,227 - +1.5 4,282,230 + +0.5 4,282,231 - -0.0 4,282,231 - -0.4 4,282,257 + +0.7 4,282,258 - +0.7 4,282,294 - +0.9 4,282,398 + BPHYT_RS19085 0.14 -0.3 4,282,512 + BPHYT_RS19085 0.23 +0.7 4,282,633 + BPHYT_RS19085 0.34 +2.0 4,282,819 + BPHYT_RS19085 0.50 +2.5 4,282,819 + BPHYT_RS19085 0.50 +0.9 4,282,842 + BPHYT_RS19085 0.52 +1.5 4,282,879 + BPHYT_RS19085 0.55 -0.3 4,282,880 - BPHYT_RS19085 0.56 -0.4
Or see this region's nucleotide sequence