Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17425

Experiment: 36hr PHYTO11 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO11 MOI 1
3,946,059	+				+0.8
3,946,059	+				+2.0
3,946,191	+				+0.5
3,946,192	-				+0.2
3,946,269	+		BPHYT_RS17420	0.13	-0.0
3,946,380	+		BPHYT_RS17420	0.32	+0.7
3,946,381	-		BPHYT_RS17420	0.32	-0.7
3,946,381	-		BPHYT_RS17420	0.32	-0.1
3,946,381	-		BPHYT_RS17420	0.32	+0.3
3,946,436	-		BPHYT_RS17420	0.41	+1.4
3,946,464	+		BPHYT_RS17420	0.46	-0.0
3,946,464	+		BPHYT_RS17420	0.46	-0.1
3,946,464	+		BPHYT_RS17420	0.46	-0.4
3,946,465	-		BPHYT_RS17420	0.46	-0.2
3,946,497	+		BPHYT_RS17420	0.51	+0.0
3,946,891	-				+0.1
3,947,008	+				-0.4
3,947,008	+				+0.0
3,947,009	-				-0.3
3,947,009	-				-0.1
3,947,077	-				+0.1
3,947,447	-		BPHYT_RS17425	0.28	-0.4
3,947,508	-		BPHYT_RS17425	0.32	+0.4
3,947,566	+		BPHYT_RS17425	0.35	-0.3
3,947,566	+		BPHYT_RS17425	0.35	+0.4
3,947,569	+		BPHYT_RS17425	0.35	+0.3
3,947,569	+		BPHYT_RS17425	0.35	+0.4
3,947,569	+		BPHYT_RS17425	0.35	+0.7
3,947,570	-		BPHYT_RS17425	0.35	-1.0
3,947,666	+		BPHYT_RS17425	0.40	-0.7
3,947,758	+		BPHYT_RS17425	0.46	+1.4
3,947,759	-		BPHYT_RS17425	0.46	+0.4
3,947,759	-		BPHYT_RS17425	0.46	-0.1
3,947,761	+		BPHYT_RS17425	0.46	-1.7
3,947,761	+		BPHYT_RS17425	0.46	-1.0
3,947,762	-		BPHYT_RS17425	0.46	-0.2
3,948,028	+		BPHYT_RS17425	0.61	-0.2
3,948,029	-		BPHYT_RS17425	0.61	+2.1
3,948,262	+		BPHYT_RS17425	0.74	+0.5
3,948,416	+		BPHYT_RS17425	0.82	-0.5
3,948,457	+				-0.2
3,948,457	+		BPHYT_RS17425	0.85	-0.4
3,948,457	+		BPHYT_RS17425	0.85	-0.5
3,948,457	+		BPHYT_RS17425	0.85	-1.3
3,948,457	+		BPHYT_RS17425	0.85	+0.4
3,948,457	+		BPHYT_RS17425	0.85	+0.0
3,948,458	-		BPHYT_RS17425	0.85	-0.0
3,948,458	-		BPHYT_RS17425	0.85	-0.5
3,948,458	-		BPHYT_RS17425	0.85	+0.4
3,948,458	-		BPHYT_RS17425	0.85	-0.1
3,948,458	-		BPHYT_RS17425	0.85	+0.6
3,948,601	+				+1.7
3,948,601	+				+0.1
3,948,602	-				+0.0
3,948,602	-				-1.4
3,948,602	-				+0.0
3,948,602	-				+0.3
3,948,602	-				+2.4
3,948,602	-				+1.5
3,948,716	-				+0.5
3,949,106	+		BPHYT_RS17430	0.39	-2.0
3,949,107	-		BPHYT_RS17430	0.39	-1.1
3,949,107	-		BPHYT_RS17430	0.39	-2.2
3,949,331	+		BPHYT_RS17430	0.70	-1.0
3,949,332	-		BPHYT_RS17430	0.70	-1.6
3,949,383	-		BPHYT_RS17430	0.77	-1.1
3,949,641	+				-0.0
3,949,642	-				-0.9