Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14830

Experiment: 36hr PHYTO11 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO11 MOI 1
3,372,805	+				-0.2
3,372,868	+				+0.6
3,372,868	+				-2.0
3,372,868	+				+0.2
3,372,868	+				+0.3
3,372,869	-				+0.6
3,372,869	-				-0.1
3,372,869	-				-0.1
3,372,869	-				-0.2
3,372,952	+		BPHYT_RS14825	0.12	-2.1
3,372,958	+		BPHYT_RS14825	0.13	-1.6
3,372,958	+		BPHYT_RS14825	0.13	-0.8
3,372,961	-		BPHYT_RS14825	0.13	+0.0
3,373,128	+		BPHYT_RS14825	0.31	-0.2
3,373,129	-		BPHYT_RS14825	0.31	+0.3
3,373,149	+		BPHYT_RS14825	0.34	+0.3
3,373,150	-		BPHYT_RS14825	0.34	+0.4
3,373,249	-		BPHYT_RS14825	0.45	+0.1
3,373,249	-		BPHYT_RS14825	0.45	-0.3
3,373,567	-		BPHYT_RS14825	0.79	-0.3
3,373,567	-		BPHYT_RS14825	0.79	-1.3
3,373,668	+				-0.9
3,373,668	+				-0.5
3,373,668	+				-1.4
3,373,669	-				-0.5
3,373,669	-				-0.7
3,373,967	+		BPHYT_RS14830	0.24	+1.1
3,373,967	+		BPHYT_RS14830	0.24	-1.7
3,373,968	-		BPHYT_RS14830	0.24	-1.4
3,374,323	+		BPHYT_RS14830	0.68	-1.1
3,374,324	-		BPHYT_RS14830	0.68	-0.6
3,374,327	-		BPHYT_RS14830	0.68	-0.4
3,374,406	+		BPHYT_RS14830	0.78	-0.5
3,374,407	-		BPHYT_RS14830	0.78	-1.8
3,374,448	+		BPHYT_RS14830	0.83	+0.4
3,374,448	+		BPHYT_RS14830	0.83	+0.1
3,374,449	-		BPHYT_RS14830	0.83	-0.3
3,374,449	-		BPHYT_RS14830	0.83	+1.0
3,374,593	+				-1.3
3,374,691	-				-1.0
3,374,696	-				+1.3
3,374,696	-				+0.5
3,374,696	-				+0.5
3,374,757	+		BPHYT_RS14835	0.11	+0.6
3,374,799	+		BPHYT_RS14835	0.15	-0.5
3,374,821	+		BPHYT_RS14835	0.18	-0.1
3,374,822	-		BPHYT_RS14835	0.18	+0.7
3,374,822	-		BPHYT_RS14835	0.18	+0.2
3,375,163	+		BPHYT_RS14835	0.55	+1.0
3,375,163	+		BPHYT_RS14835	0.55	+0.1
3,375,164	-		BPHYT_RS14835	0.55	+1.4
3,375,244	-		BPHYT_RS14835	0.64	+1.4
3,375,379	+		BPHYT_RS14835	0.78	+0.3
3,375,381	+		BPHYT_RS14835	0.78	-0.3
3,375,381	+		BPHYT_RS14835	0.78	-0.4
3,375,565	-				-0.9