Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07230
Experiment: 36hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO11 MOI 1 |
---|---|---|---|---|---|
remove | |||||
1,641,161 | + | BPHYT_RS07220 | 0.48 | -0.6 | |
1,641,162 | - | BPHYT_RS07220 | 0.48 | -1.1 | |
1,641,891 | + | -0.9 | |||
1,641,966 | - | +1.1 | |||
1,642,141 | + | -0.8 | |||
1,642,338 | - | BPHYT_RS07230 | 0.28 | +0.5 | |
1,642,779 | - | BPHYT_RS07230 | 0.73 | +0.0 | |
1,642,826 | + | BPHYT_RS07230 | 0.78 | +0.2 | |
1,643,128 | + | -1.1 | |||
1,643,129 | - | -0.1 |
Or see this region's nucleotide sequence