Experiment: 36hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01830 and BPHYT_RS01835 are separated by 278 nucleotides BPHYT_RS01835 and BPHYT_RS01840 are separated by 41 nucleotides BPHYT_RS01840 and BPHYT_RS01845 are separated by 88 nucleotides
BPHYT_RS01830: BPHYT_RS01830 - LacI family transcriptional regulator, at 415,862 to 416,914
_RS01830
BPHYT_RS01835: BPHYT_RS01835 - aldose epimerase, at 417,193 to 418,233
_RS01835
BPHYT_RS01840: BPHYT_RS01840 - endonuclease, at 418,275 to 419,072
_RS01840
BPHYT_RS01845: BPHYT_RS01845 - hypothetical protein, at 419,161 to 419,700
_RS01845
Position (kb) 417
418
419 Strain fitness (log2 ratio) -2
-1
0
1
2 at 416.368 kb on + strand, within BPHYT_RS01830 at 416.368 kb on + strand, within BPHYT_RS01830 at 416.368 kb on + strand, within BPHYT_RS01830 at 416.369 kb on - strand, within BPHYT_RS01830 at 416.369 kb on - strand, within BPHYT_RS01830 at 416.369 kb on - strand, within BPHYT_RS01830 at 416.370 kb on + strand, within BPHYT_RS01830 at 416.370 kb on + strand, within BPHYT_RS01830 at 416.371 kb on - strand, within BPHYT_RS01830 at 416.371 kb on - strand, within BPHYT_RS01830 at 416.371 kb on - strand, within BPHYT_RS01830 at 416.371 kb on - strand, within BPHYT_RS01830 at 416.471 kb on - strand at 416.472 kb on + strand, within BPHYT_RS01830 at 416.472 kb on + strand, within BPHYT_RS01830 at 416.472 kb on + strand, within BPHYT_RS01830 at 416.491 kb on + strand, within BPHYT_RS01830 at 416.492 kb on - strand, within BPHYT_RS01830 at 416.536 kb on - strand, within BPHYT_RS01830 at 416.628 kb on + strand, within BPHYT_RS01830 at 416.628 kb on + strand, within BPHYT_RS01830 at 416.656 kb on - strand, within BPHYT_RS01830 at 416.724 kb on + strand, within BPHYT_RS01830 at 416.724 kb on + strand, within BPHYT_RS01830 at 416.810 kb on + strand at 416.810 kb on + strand at 416.811 kb on - strand at 416.811 kb on - strand at 416.811 kb on - strand at 417.014 kb on + strand at 417.015 kb on - strand at 417.017 kb on + strand at 417.017 kb on + strand at 417.018 kb on - strand at 417.018 kb on - strand at 417.018 kb on - strand at 417.194 kb on + strand at 417.194 kb on + strand at 417.194 kb on + strand at 417.406 kb on + strand, within BPHYT_RS01835 at 417.512 kb on - strand, within BPHYT_RS01835 at 417.693 kb on - strand, within BPHYT_RS01835 at 417.823 kb on + strand, within BPHYT_RS01835 at 417.853 kb on + strand, within BPHYT_RS01835 at 418.073 kb on + strand, within BPHYT_RS01835 at 418.231 kb on + strand at 418.232 kb on - strand at 418.276 kb on + strand at 418.298 kb on + strand at 418.300 kb on + strand at 418.300 kb on + strand at 418.300 kb on + strand at 418.300 kb on + strand at 418.301 kb on - strand at 418.301 kb on - strand at 418.301 kb on - strand at 418.997 kb on + strand at 418.998 kb on - strand at 419.038 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO11 MOI 1 remove 416,368 + BPHYT_RS01830 0.48 -1.6 416,368 + BPHYT_RS01830 0.48 -0.9 416,368 + BPHYT_RS01830 0.48 -1.0 416,369 - BPHYT_RS01830 0.48 -0.4 416,369 - BPHYT_RS01830 0.48 -0.8 416,369 - BPHYT_RS01830 0.48 -0.4 416,370 + BPHYT_RS01830 0.48 +0.1 416,370 + BPHYT_RS01830 0.48 +0.3 416,371 - BPHYT_RS01830 0.48 -0.2 416,371 - BPHYT_RS01830 0.48 -0.1 416,371 - BPHYT_RS01830 0.48 -1.5 416,371 - BPHYT_RS01830 0.48 -0.1 416,471 - -1.1 416,472 + BPHYT_RS01830 0.58 -1.0 416,472 + BPHYT_RS01830 0.58 -0.4 416,472 + BPHYT_RS01830 0.58 -1.2 416,491 + BPHYT_RS01830 0.60 +0.2 416,492 - BPHYT_RS01830 0.60 -0.7 416,536 - BPHYT_RS01830 0.64 -0.7 416,628 + BPHYT_RS01830 0.73 +0.4 416,628 + BPHYT_RS01830 0.73 -1.0 416,656 - BPHYT_RS01830 0.75 +1.4 416,724 + BPHYT_RS01830 0.82 +0.5 416,724 + BPHYT_RS01830 0.82 -0.7 416,810 + +0.0 416,810 + -0.1 416,811 - -0.2 416,811 - +0.9 416,811 - -2.0 417,014 + +2.5 417,015 - -0.3 417,017 + -0.2 417,017 + +0.0 417,018 - +1.5 417,018 - -2.7 417,018 - -1.2 417,194 + +0.7 417,194 + -0.9 417,194 + -0.1 417,406 + BPHYT_RS01835 0.20 -0.0 417,512 - BPHYT_RS01835 0.31 -0.0 417,693 - BPHYT_RS01835 0.48 -1.2 417,823 + BPHYT_RS01835 0.61 +0.8 417,853 + BPHYT_RS01835 0.63 +0.1 418,073 + BPHYT_RS01835 0.85 -0.3 418,231 + +0.1 418,232 - -0.5 418,276 + -0.3 418,298 + +0.2 418,300 + +0.5 418,300 + +1.5 418,300 + +1.5 418,300 + +0.9 418,301 - -0.0 418,301 - -0.0 418,301 - +0.7 418,997 + -0.8 418,998 - +0.5 419,038 - -0.3
Or see this region's nucleotide sequence