Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00440

Experiment: 36hr PHYTO11 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO11 MOI 1
108,344	+		BPHYT_RS00435	0.38	+0.4
108,370	+		BPHYT_RS00435	0.41	-1.9
108,371	-		BPHYT_RS00435	0.41	-0.4
108,371	-		BPHYT_RS00435	0.41	-0.6
108,371	-		BPHYT_RS00435	0.41	+0.8
108,371	-		BPHYT_RS00435	0.41	-1.3
108,371	-		BPHYT_RS00435	0.41	-0.0
108,371	-		BPHYT_RS00435	0.41	-0.1
108,371	-		BPHYT_RS00435	0.41	-0.5
108,412	+		BPHYT_RS00435	0.44	-0.9
108,412	+		BPHYT_RS00435	0.44	+0.9
108,433	+		BPHYT_RS00435	0.46	-1.0
108,433	+		BPHYT_RS00435	0.46	-0.1
108,433	+		BPHYT_RS00435	0.46	+0.9
108,433	+		BPHYT_RS00435	0.46	-0.4
108,433	+		BPHYT_RS00435	0.46	-0.1
108,433	+		BPHYT_RS00435	0.46	+0.2
108,434	-		BPHYT_RS00435	0.46	-1.2
108,434	-		BPHYT_RS00435	0.46	-0.6
108,434	-		BPHYT_RS00435	0.46	-0.6
108,434	-		BPHYT_RS00435	0.46	+0.1
108,434	-		BPHYT_RS00435	0.46	-0.8
108,542	+		BPHYT_RS00435	0.56	-1.8
108,543	-		BPHYT_RS00435	0.56	+0.4
108,543	-		BPHYT_RS00435	0.56	-0.0
108,549	+		BPHYT_RS00435	0.56	+0.4
108,549	+		BPHYT_RS00435	0.56	+0.3
108,755	+		BPHYT_RS00435	0.74	-0.1
108,900	+		BPHYT_RS00435	0.86	-0.8
108,900	+		BPHYT_RS00435	0.86	-0.1
108,900	+		BPHYT_RS00435	0.86	-1.0
108,949	+				+0.1
108,950	-				+0.1
109,162	-				-0.6
109,219	+				-0.4
109,220	-				-0.2
109,307	-				-1.5
109,397	-		BPHYT_RS00440	0.42	+1.0
109,397	-		BPHYT_RS00440	0.42	-0.2
109,455	-		BPHYT_RS00440	0.71	+0.6
109,457	-		BPHYT_RS00440	0.72	+0.7
109,501	+				-0.3
109,501	+				-0.2
109,502	-				-1.1
109,502	-				+0.9
109,502	-				+0.1
109,502	-				-0.4
109,502	-				-1.6
109,502	-				+0.1
109,502	-				-0.5
109,502	-				-0.5
109,502	-				+0.8
109,503	+				+1.5
109,503	+				+0.7
109,504	-				-0.3
109,504	-				-1.2
109,504	-				+1.1
109,557	+				-1.1
109,586	+				-0.6
109,586	+				+0.2
109,587	-				-1.8
109,587	-				-0.3
109,629	+				-0.3
109,629	+				-0.5
109,629	+				+0.0
109,650	-				+0.3
109,650	-				-0.4
109,650	-				-1.3
109,650	-				+0.4
109,749	+				-0.1
109,832	-				+0.0
110,291	+		BPHYT_RS00450	0.30	-0.0
110,291	+		BPHYT_RS00450	0.30	-1.3
110,295	+		BPHYT_RS00450	0.31	-1.2
110,295	+		BPHYT_RS00450	0.31	+0.2
110,295	+		BPHYT_RS00450	0.31	+0.7
110,295	+		BPHYT_RS00450	0.31	-0.3
110,310	+		BPHYT_RS00450	0.35	-1.0
110,317	-		BPHYT_RS00450	0.37	-0.4
110,397	+		BPHYT_RS00450	0.56	-0.3
110,397	+		BPHYT_RS00450	0.56	+1.2
110,486	+		BPHYT_RS00450	0.78	-0.9