Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25605

Experiment: 36hr PHYTO9 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25595 and BPHYT_RS25600 are separated by 441 nucleotidesBPHYT_RS25600 and BPHYT_RS25605 overlap by 4 nucleotidesBPHYT_RS25605 and BPHYT_RS25610 are separated by 72 nucleotides BPHYT_RS25595: BPHYT_RS25595 - ATPase AAA, at 1,314,879 to 1,316,528 _RS25595 BPHYT_RS25600: BPHYT_RS25600 - hypothetical protein, at 1,316,970 to 1,317,242 _RS25600 BPHYT_RS25605: BPHYT_RS25605 - symporter, at 1,317,239 to 1,318,789 _RS25605 BPHYT_RS25610: BPHYT_RS25610 - HAD family hydrolase, at 1,318,862 to 1,319,548 _RS25610 Position (kb) 1317 1318 1319Strain fitness (log2 ratio) -2 -1 0 1at 1316.280 kb on - strand, within BPHYT_RS25595at 1317.251 kb on - strandat 1317.599 kb on - strand, within BPHYT_RS25605at 1317.629 kb on + strand, within BPHYT_RS25605at 1317.630 kb on - strand, within BPHYT_RS25605at 1317.999 kb on - strand, within BPHYT_RS25605at 1318.731 kb on - strandat 1319.434 kb on - strand, within BPHYT_RS25610at 1319.723 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO9 MOI 0.1
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1,316,280 - BPHYT_RS25595 0.85 -0.2
1,317,251 - -2.1
1,317,599 - BPHYT_RS25605 0.23 -1.3
1,317,629 + BPHYT_RS25605 0.25 -1.3
1,317,630 - BPHYT_RS25605 0.25 -0.4
1,317,999 - BPHYT_RS25605 0.49 -1.3
1,318,731 - +0.2
1,319,434 - BPHYT_RS25610 0.83 -1.4
1,319,723 - -0.8

Or see this region's nucleotide sequence