Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25155

Experiment: 36hr PHYTO9 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25150 and BPHYT_RS25155 are separated by 154 nucleotidesBPHYT_RS25155 and BPHYT_RS25160 are separated by 11 nucleotides BPHYT_RS25150: BPHYT_RS25150 - class C beta-lactamase, at 1,213,704 to 1,214,870 _RS25150 BPHYT_RS25155: BPHYT_RS25155 - oxygen-dependent choline dehydrogenase, at 1,215,025 to 1,216,710 _RS25155 BPHYT_RS25160: BPHYT_RS25160 - NAD/NADP-dependent betaine aldehyde dehydrogenase, at 1,216,722 to 1,218,191 _RS25160 Position (kb) 1215 1216 1217Strain fitness (log2 ratio) -1 0 1at 1214.137 kb on + strand, within BPHYT_RS25150at 1214.194 kb on + strand, within BPHYT_RS25150at 1214.240 kb on - strand, within BPHYT_RS25150at 1214.681 kb on - strand, within BPHYT_RS25150at 1215.596 kb on + strand, within BPHYT_RS25155at 1216.258 kb on - strand, within BPHYT_RS25155at 1216.349 kb on + strand, within BPHYT_RS25155at 1216.415 kb on + strand, within BPHYT_RS25155at 1216.488 kb on + strand, within BPHYT_RS25155at 1216.689 kb on - strandat 1216.869 kb on - strand, within BPHYT_RS25160at 1216.869 kb on - strand, within BPHYT_RS25160

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO9 MOI 0.1
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1,214,137 + BPHYT_RS25150 0.37 -1.1
1,214,194 + BPHYT_RS25150 0.42 +0.0
1,214,240 - BPHYT_RS25150 0.46 +0.2
1,214,681 - BPHYT_RS25150 0.84 -0.4
1,215,596 + BPHYT_RS25155 0.34 -0.5
1,216,258 - BPHYT_RS25155 0.73 -0.1
1,216,349 + BPHYT_RS25155 0.79 -0.3
1,216,415 + BPHYT_RS25155 0.82 +0.4
1,216,488 + BPHYT_RS25155 0.87 -0.4
1,216,689 - -0.1
1,216,869 - BPHYT_RS25160 0.10 -1.1
1,216,869 - BPHYT_RS25160 0.10 +1.2

Or see this region's nucleotide sequence