Experiment: 36hr PHYTO9 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22015 and BPHYT_RS22020 are separated by 303 nucleotides BPHYT_RS22020 and BPHYT_RS22025 are separated by 51 nucleotides
BPHYT_RS22015: BPHYT_RS22015 - spermidine/putrescine ABC transporter ATPase, at 493,870 to 494,961
_RS22015
BPHYT_RS22020: BPHYT_RS22020 - IclR family transcriptional regulator, at 495,265 to 496,143
_RS22020
BPHYT_RS22025: BPHYT_RS22025 - porin, at 496,195 to 497,784
_RS22025
Position (kb) 495
496
497 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 494.307 kb on - strand, within BPHYT_RS22015 at 494.325 kb on + strand, within BPHYT_RS22015 at 494.590 kb on - strand, within BPHYT_RS22015 at 495.104 kb on + strand at 495.105 kb on - strand at 495.226 kb on - strand at 495.572 kb on + strand, within BPHYT_RS22020 at 495.841 kb on + strand, within BPHYT_RS22020 at 496.262 kb on + strand at 496.332 kb on - strand at 496.506 kb on - strand, within BPHYT_RS22025 at 496.522 kb on - strand, within BPHYT_RS22025 at 496.559 kb on + strand, within BPHYT_RS22025 at 496.559 kb on + strand, within BPHYT_RS22025 at 496.587 kb on - strand, within BPHYT_RS22025 at 496.591 kb on - strand, within BPHYT_RS22025 at 496.591 kb on - strand, within BPHYT_RS22025 at 496.748 kb on + strand, within BPHYT_RS22025 at 496.850 kb on + strand, within BPHYT_RS22025 at 496.850 kb on + strand, within BPHYT_RS22025 at 496.851 kb on - strand, within BPHYT_RS22025 at 496.898 kb on + strand, within BPHYT_RS22025 at 496.898 kb on + strand, within BPHYT_RS22025 at 496.898 kb on + strand, within BPHYT_RS22025 at 496.928 kb on + strand, within BPHYT_RS22025 at 497.109 kb on - strand, within BPHYT_RS22025
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO9 MOI 0.1 remove 494,307 - BPHYT_RS22015 0.40 -0.6 494,325 + BPHYT_RS22015 0.42 +0.5 494,590 - BPHYT_RS22015 0.66 -0.1 495,104 + +0.4 495,105 - -0.0 495,226 - -0.5 495,572 + BPHYT_RS22020 0.35 +0.1 495,841 + BPHYT_RS22020 0.66 +0.3 496,262 + -1.0 496,332 - +0.9 496,506 - BPHYT_RS22025 0.20 -1.1 496,522 - BPHYT_RS22025 0.21 +1.9 496,559 + BPHYT_RS22025 0.23 -0.5 496,559 + BPHYT_RS22025 0.23 +0.4 496,587 - BPHYT_RS22025 0.25 -0.4 496,591 - BPHYT_RS22025 0.25 +4.1 496,591 - BPHYT_RS22025 0.25 +0.5 496,748 + BPHYT_RS22025 0.35 +0.4 496,850 + BPHYT_RS22025 0.41 -1.3 496,850 + BPHYT_RS22025 0.41 -1.7 496,851 - BPHYT_RS22025 0.41 +0.0 496,898 + BPHYT_RS22025 0.44 -0.9 496,898 + BPHYT_RS22025 0.44 +0.2 496,898 + BPHYT_RS22025 0.44 -0.1 496,928 + BPHYT_RS22025 0.46 -0.6 497,109 - BPHYT_RS22025 0.57 -0.3
Or see this region's nucleotide sequence