Experiment: 36hr PHYTO9 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18990 and BPHYT_RS18995 are separated by 43 nucleotides BPHYT_RS18995 and BPHYT_RS19000 are separated by 69 nucleotides BPHYT_RS19000 and BPHYT_RS19005 are separated by 86 nucleotides BPHYT_RS19005 and BPHYT_RS19010 are separated by 85 nucleotides
BPHYT_RS18990: BPHYT_RS18990 - chemotaxis protein, at 4,263,429 to 4,265,282
_RS18990
BPHYT_RS18995: BPHYT_RS18995 - purine-binding chemotaxis protein, at 4,265,326 to 4,265,862
_RS18995
BPHYT_RS19000: BPHYT_RS19000 - chemotaxis protein CheA, at 4,265,932 to 4,268,232
_RS19000
BPHYT_RS19005: BPHYT_RS19005 - chemotaxis protein CheY, at 4,268,319 to 4,268,696
_RS19005
BPHYT_RS19010: BPHYT_RS19010 - flagellar motor protein MotB, at 4,268,782 to 4,269,789
_RS19010
Position (kb) 4265
4266
4267
4268
4269 Strain fitness (log2 ratio) -1
0
1
2
3 at 4265.202 kb on + strand at 4265.244 kb on + strand at 4265.604 kb on + strand, within BPHYT_RS18995 at 4265.604 kb on + strand, within BPHYT_RS18995 at 4265.604 kb on + strand, within BPHYT_RS18995 at 4265.605 kb on - strand, within BPHYT_RS18995 at 4265.605 kb on - strand, within BPHYT_RS18995 at 4265.697 kb on - strand, within BPHYT_RS18995 at 4265.754 kb on + strand, within BPHYT_RS18995 at 4265.755 kb on - strand, within BPHYT_RS18995 at 4265.755 kb on - strand, within BPHYT_RS18995 at 4265.808 kb on + strand, within BPHYT_RS18995 at 4265.899 kb on + strand at 4265.899 kb on + strand at 4265.899 kb on + strand at 4265.899 kb on + strand at 4265.900 kb on - strand at 4265.900 kb on - strand at 4265.900 kb on - strand at 4265.906 kb on + strand at 4266.224 kb on + strand, within BPHYT_RS19000 at 4266.269 kb on + strand, within BPHYT_RS19000 at 4266.269 kb on + strand, within BPHYT_RS19000 at 4266.269 kb on + strand at 4266.269 kb on + strand, within BPHYT_RS19000 at 4266.269 kb on + strand, within BPHYT_RS19000 at 4266.269 kb on + strand, within BPHYT_RS19000 at 4266.270 kb on - strand, within BPHYT_RS19000 at 4266.329 kb on - strand, within BPHYT_RS19000 at 4266.329 kb on - strand, within BPHYT_RS19000 at 4266.329 kb on - strand, within BPHYT_RS19000 at 4266.905 kb on + strand, within BPHYT_RS19000 at 4266.906 kb on - strand, within BPHYT_RS19000 at 4266.906 kb on - strand, within BPHYT_RS19000 at 4267.281 kb on + strand, within BPHYT_RS19000 at 4267.751 kb on - strand, within BPHYT_RS19000 at 4267.998 kb on + strand, within BPHYT_RS19000 at 4268.207 kb on + strand at 4268.208 kb on - strand at 4268.300 kb on - strand at 4268.300 kb on - strand at 4268.309 kb on + strand at 4268.309 kb on + strand at 4268.310 kb on - strand at 4268.320 kb on + strand at 4268.450 kb on + strand, within BPHYT_RS19005 at 4268.451 kb on - strand, within BPHYT_RS19005 at 4268.533 kb on + strand, within BPHYT_RS19005 at 4268.533 kb on + strand, within BPHYT_RS19005 at 4268.533 kb on + strand, within BPHYT_RS19005 at 4268.534 kb on - strand, within BPHYT_RS19005 at 4268.534 kb on - strand, within BPHYT_RS19005 at 4268.534 kb on - strand, within BPHYT_RS19005 at 4268.721 kb on - strand at 4268.721 kb on - strand at 4269.107 kb on + strand, within BPHYT_RS19010 at 4269.108 kb on - strand, within BPHYT_RS19010 at 4269.128 kb on + strand, within BPHYT_RS19010 at 4269.218 kb on + strand, within BPHYT_RS19010 at 4269.218 kb on + strand, within BPHYT_RS19010 at 4269.218 kb on + strand, within BPHYT_RS19010 at 4269.218 kb on + strand, within BPHYT_RS19010
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO9 MOI 0.1 remove 4,265,202 + -1.2 4,265,244 + -0.2 4,265,604 + BPHYT_RS18995 0.52 -0.8 4,265,604 + BPHYT_RS18995 0.52 +0.8 4,265,604 + BPHYT_RS18995 0.52 -0.0 4,265,605 - BPHYT_RS18995 0.52 -0.7 4,265,605 - BPHYT_RS18995 0.52 +1.7 4,265,697 - BPHYT_RS18995 0.69 -1.4 4,265,754 + BPHYT_RS18995 0.80 -0.9 4,265,755 - BPHYT_RS18995 0.80 -0.9 4,265,755 - BPHYT_RS18995 0.80 -0.3 4,265,808 + BPHYT_RS18995 0.90 -0.6 4,265,899 + -0.6 4,265,899 + +0.0 4,265,899 + -0.3 4,265,899 + -0.8 4,265,900 - -1.5 4,265,900 - -0.5 4,265,900 - -0.8 4,265,906 + +1.2 4,266,224 + BPHYT_RS19000 0.13 -1.2 4,266,269 + BPHYT_RS19000 0.15 -1.0 4,266,269 + BPHYT_RS19000 0.15 -0.2 4,266,269 + +1.4 4,266,269 + BPHYT_RS19000 0.15 -0.7 4,266,269 + BPHYT_RS19000 0.15 +1.2 4,266,269 + BPHYT_RS19000 0.15 +0.3 4,266,270 - BPHYT_RS19000 0.15 -1.7 4,266,329 - BPHYT_RS19000 0.17 +0.9 4,266,329 - BPHYT_RS19000 0.17 -1.0 4,266,329 - BPHYT_RS19000 0.17 +0.2 4,266,905 + BPHYT_RS19000 0.42 +0.7 4,266,906 - BPHYT_RS19000 0.42 -1.6 4,266,906 - BPHYT_RS19000 0.42 -0.9 4,267,281 + BPHYT_RS19000 0.59 +0.2 4,267,751 - BPHYT_RS19000 0.79 +0.1 4,267,998 + BPHYT_RS19000 0.90 +0.8 4,268,207 + +1.0 4,268,208 - +1.1 4,268,300 - -1.1 4,268,300 - +1.4 4,268,309 + -0.6 4,268,309 + -1.2 4,268,310 - -1.1 4,268,320 + -0.7 4,268,450 + BPHYT_RS19005 0.35 +0.0 4,268,451 - BPHYT_RS19005 0.35 -0.3 4,268,533 + BPHYT_RS19005 0.57 -0.2 4,268,533 + BPHYT_RS19005 0.57 +0.3 4,268,533 + BPHYT_RS19005 0.57 -0.0 4,268,534 - BPHYT_RS19005 0.57 -1.7 4,268,534 - BPHYT_RS19005 0.57 -1.5 4,268,534 - BPHYT_RS19005 0.57 -0.6 4,268,721 - -0.1 4,268,721 - -0.7 4,269,107 + BPHYT_RS19010 0.32 -0.8 4,269,108 - BPHYT_RS19010 0.32 +3.0 4,269,128 + BPHYT_RS19010 0.34 +0.1 4,269,218 + BPHYT_RS19010 0.43 +1.1 4,269,218 + BPHYT_RS19010 0.43 +0.2 4,269,218 + BPHYT_RS19010 0.43 +0.2 4,269,218 + BPHYT_RS19010 0.43 +0.2
Or see this region's nucleotide sequence