Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34470

Experiment: 36hr PHYTO9 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO9 MOI 1
3,340,029	+		BPHYT_RS34460	0.74	-0.1
3,340,287	-		BPHYT_RS34465	0.11	+3.5
3,340,288	+		BPHYT_RS34465	0.11	-1.4
3,340,288	+		BPHYT_RS34465	0.11	-2.7
3,340,289	-		BPHYT_RS34465	0.11	-1.3
3,340,289	-		BPHYT_RS34465	0.11	-0.1
3,340,471	+		BPHYT_RS34465	0.36	-0.5
3,340,569	-		BPHYT_RS34465	0.49	+0.8
3,340,582	+		BPHYT_RS34465	0.51	+1.5
3,340,582	+		BPHYT_RS34465	0.51	-0.7
3,340,583	-		BPHYT_RS34465	0.51	+0.3
3,340,823	-		BPHYT_RS34465	0.84	-0.6
3,340,898	+				+0.9
3,341,361	-		BPHYT_RS34470	0.43	-2.1
3,341,737	+		BPHYT_RS34470	0.86	+1.1
3,341,737	+		BPHYT_RS34470	0.86	-1.3
3,341,741	-		BPHYT_RS34470	0.87	+0.7
3,341,836	-				+0.0
3,341,945	+				-0.7
3,341,946	-				+1.7
3,341,946	-				+0.1
3,342,051	+				-1.2
3,342,060	+				-1.7
3,342,060	+				-0.6
3,342,060	+				+0.4
3,342,065	-				-0.1
3,342,088	-				-2.2
3,342,295	+		BPHYT_RS34475	0.21	-1.4
3,342,296	-		BPHYT_RS34475	0.21	-0.1
3,342,302	+		BPHYT_RS34475	0.21	-0.5
3,342,302	+		BPHYT_RS34475	0.21	-1.0
3,342,634	-		BPHYT_RS34475	0.47	-0.6
3,342,780	-		BPHYT_RS34475	0.58	+0.5