Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33305

Experiment: 36hr PHYTO9 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO9 MOI 1
3,052,727	+		BPHYT_RS33300	0.45	-2.1
3,053,351	+				-2.5
3,053,467	+				+0.5
3,053,491	-				+1.9
3,053,507	+				-1.5
3,053,507	+				-0.8
3,053,554	+				+1.0
3,053,554	+				-0.2
3,053,575	+				+0.1
3,053,926	+		BPHYT_RS33305	0.12	-0.8
3,053,994	+		BPHYT_RS33305	0.16	-1.3
3,053,995	-		BPHYT_RS33305	0.16	+0.7
3,054,381	+		BPHYT_RS33305	0.36	-0.3
3,054,550	+		BPHYT_RS33305	0.45	-2.0
3,054,708	+		BPHYT_RS33305	0.53	+0.3
3,054,708	+		BPHYT_RS33305	0.53	-0.7
3,054,709	-		BPHYT_RS33305	0.53	-1.4
3,055,155	+		BPHYT_RS33305	0.77	-0.8
3,055,476	+				-0.9
3,055,699	-				+0.4
3,055,760	+				-1.1
3,055,761	-				-0.8
3,055,930	+		BPHYT_RS33310	0.26	-1.9
3,055,982	-		BPHYT_RS33310	0.32	+0.2
3,056,065	-		BPHYT_RS33310	0.40	+0.4
3,056,102	+		BPHYT_RS33310	0.44	+2.4
3,056,103	-		BPHYT_RS33310	0.44	+0.8
3,056,188	+		BPHYT_RS33310	0.53	+0.0
3,056,188	+		BPHYT_RS33310	0.53	+0.9
3,056,189	-		BPHYT_RS33310	0.53	-1.0
3,056,413	+		BPHYT_RS33310	0.76	+0.3
3,056,414	-		BPHYT_RS33310	0.76	+0.5