Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23960

Experiment: 36hr PHYTO9 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS23955 and BPHYT_RS23960 are separated by 86 nucleotidesBPHYT_RS23960 and BPHYT_RS23965 are separated by 28 nucleotides BPHYT_RS23955: BPHYT_RS23955 - LysR family transcriptional regulator, at 939,359 to 940,240 _RS23955 BPHYT_RS23960: BPHYT_RS23960 - sugar ABC transporter, at 940,327 to 941,385 _RS23960 BPHYT_RS23965: BPHYT_RS23965 - iron ABC transporter permease, at 941,414 to 943,018 _RS23965 Position (kb) 940 941 942Strain fitness (log2 ratio) -1 0 1at 939.469 kb on + strand, within BPHYT_RS23955at 939.646 kb on - strand, within BPHYT_RS23955at 939.874 kb on + strand, within BPHYT_RS23955at 939.914 kb on + strand, within BPHYT_RS23955at 939.914 kb on + strand, within BPHYT_RS23955at 940.340 kb on + strandat 940.506 kb on - strand, within BPHYT_RS23960at 940.646 kb on - strand, within BPHYT_RS23960at 941.800 kb on - strand, within BPHYT_RS23965at 942.351 kb on + strand, within BPHYT_RS23965

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO9 MOI 1
remove
939,469 + BPHYT_RS23955 0.12 -0.2
939,646 - BPHYT_RS23955 0.33 +1.4
939,874 + BPHYT_RS23955 0.58 +0.4
939,914 + BPHYT_RS23955 0.63 -0.3
939,914 + BPHYT_RS23955 0.63 +0.9
940,340 + -0.8
940,506 - BPHYT_RS23960 0.17 -0.0
940,646 - BPHYT_RS23960 0.30 -0.9
941,800 - BPHYT_RS23965 0.24 -0.5
942,351 + BPHYT_RS23965 0.58 -1.2

Or see this region's nucleotide sequence