Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23070

Experiment: 36hr PHYTO9 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23065 and BPHYT_RS23070 are separated by 40 nucleotidesBPHYT_RS23070 and BPHYT_RS23075 are separated by 162 nucleotides BPHYT_RS23065: BPHYT_RS23065 - MFS transporter, at 736,773 to 738,239 _RS23065 BPHYT_RS23070: BPHYT_RS23070 - hypothetical protein, at 738,280 to 740,211 _RS23070 BPHYT_RS23075: BPHYT_RS23075 - GntR family transcriptional regulator, at 740,374 to 741,030 _RS23075 Position (kb) 738 739 740 741Strain fitness (log2 ratio) -1 0 1 2 3 4at 737.790 kb on + strand, within BPHYT_RS23065at 737.893 kb on + strand, within BPHYT_RS23065at 737.897 kb on + strand, within BPHYT_RS23065at 738.237 kb on + strandat 738.271 kb on + strandat 738.303 kb on + strandat 738.304 kb on - strandat 738.304 kb on - strandat 738.652 kb on - strand, within BPHYT_RS23070at 738.806 kb on + strand, within BPHYT_RS23070at 738.806 kb on + strand, within BPHYT_RS23070at 738.807 kb on - strand, within BPHYT_RS23070at 739.050 kb on + strand, within BPHYT_RS23070at 739.856 kb on + strand, within BPHYT_RS23070at 739.992 kb on - strand, within BPHYT_RS23070at 740.267 kb on - strandat 740.267 kb on - strandat 740.295 kb on + strandat 740.844 kb on - strand, within BPHYT_RS23075at 741.201 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO9 MOI 1
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737,790 + BPHYT_RS23065 0.69 -0.1
737,893 + BPHYT_RS23065 0.76 +1.0
737,897 + BPHYT_RS23065 0.77 -1.0
738,237 + -0.1
738,271 + -0.8
738,303 + -0.6
738,304 - +0.9
738,304 - +0.9
738,652 - BPHYT_RS23070 0.19 +1.7
738,806 + BPHYT_RS23070 0.27 -0.2
738,806 + BPHYT_RS23070 0.27 +3.8
738,807 - BPHYT_RS23070 0.27 -0.3
739,050 + BPHYT_RS23070 0.40 -0.6
739,856 + BPHYT_RS23070 0.82 +0.9
739,992 - BPHYT_RS23070 0.89 -1.2
740,267 - +0.1
740,267 - -1.2
740,295 + -0.7
740,844 - BPHYT_RS23075 0.72 -1.4
741,201 + +1.0

Or see this region's nucleotide sequence