Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22845

Experiment: 36hr PHYTO9 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22835 and BPHYT_RS22840 are separated by 49 nucleotidesBPHYT_RS22840 and BPHYT_RS22845 are separated by 145 nucleotidesBPHYT_RS22845 and BPHYT_RS22850 are separated by 213 nucleotidesBPHYT_RS22850 and BPHYT_RS22855 are separated by 210 nucleotides BPHYT_RS22835: BPHYT_RS22835 - flagellar motor protein MotA, at 683,433 to 684,197 _RS22835 BPHYT_RS22840: BPHYT_RS22840 - motility protein B, at 684,247 to 684,915 _RS22840 BPHYT_RS22845: BPHYT_RS22845 - hypothetical protein, at 685,061 to 685,309 _RS22845 BPHYT_RS22850: BPHYT_RS22850 - thioredoxin, at 685,523 to 686,089 _RS22850 BPHYT_RS22855: BPHYT_RS22855 - aldehyde-activating protein, at 686,300 to 686,671 _RS22855 Position (kb) 685 686Strain fitness (log2 ratio) -1 0 1at 684.093 kb on + strand, within BPHYT_RS22835at 684.731 kb on - strand, within BPHYT_RS22840at 684.955 kb on + strandat 684.955 kb on + strandat 685.597 kb on - strand, within BPHYT_RS22850at 685.653 kb on + strand, within BPHYT_RS22850at 686.152 kb on - strandat 686.152 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO9 MOI 1
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684,093 + BPHYT_RS22835 0.86 +0.6
684,731 - BPHYT_RS22840 0.72 -1.4
684,955 + -0.5
684,955 + -1.2
685,597 - BPHYT_RS22850 0.13 -0.5
685,653 + BPHYT_RS22850 0.23 +0.0
686,152 - -0.2
686,152 - +0.1

Or see this region's nucleotide sequence