Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20160

Experiment: 36hr PHYTO9 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20155 and BPHYT_RS20160 overlap by 4 nucleotidesBPHYT_RS20160 and BPHYT_RS20165 overlap by 1 nucleotides BPHYT_RS20155: BPHYT_RS20155 - hypothetical protein, at 64,143 to 65,402 _RS20155 BPHYT_RS20160: BPHYT_RS20160 - hypothetical protein, at 65,399 to 66,730 _RS20160 BPHYT_RS20165: BPHYT_RS20165 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 66,730 to 67,968 _RS20165 Position (kb) 65 66 67Strain fitness (log2 ratio) -1 0 1 2at 64.742 kb on - strand, within BPHYT_RS20155at 65.842 kb on + strand, within BPHYT_RS20160at 65.858 kb on - strand, within BPHYT_RS20160at 66.288 kb on + strand, within BPHYT_RS20160at 66.436 kb on - strandat 66.580 kb on - strand, within BPHYT_RS20160at 66.750 kb on + strandat 66.965 kb on - strand, within BPHYT_RS20165at 67.514 kb on - strand, within BPHYT_RS20165at 67.676 kb on - strand, within BPHYT_RS20165at 67.728 kb on + strand, within BPHYT_RS20165

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO9 MOI 1
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64,742 - BPHYT_RS20155 0.48 -0.3
65,842 + BPHYT_RS20160 0.33 +0.2
65,858 - BPHYT_RS20160 0.34 +0.8
66,288 + BPHYT_RS20160 0.67 -0.5
66,436 - +2.5
66,580 - BPHYT_RS20160 0.89 +0.2
66,750 + +1.0
66,965 - BPHYT_RS20165 0.19 +1.8
67,514 - BPHYT_RS20165 0.63 +0.3
67,676 - BPHYT_RS20165 0.76 -0.0
67,728 + BPHYT_RS20165 0.81 -1.0

Or see this region's nucleotide sequence