Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18460

Experiment: 36hr PHYTO9 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO9 MOI 1
4,147,482	+				-0.4
4,147,482	+				-1.4
4,147,588	-				-2.7
4,147,588	-				+0.2
4,147,672	-				+0.4
4,147,702	+				-0.3
4,147,723	+				+0.0
4,147,723	+				+0.5
4,147,724	-				-0.5
4,147,766	+				+1.4
4,147,766	+				-0.4
4,147,872	-				-0.2
4,147,872	-				-0.0
4,148,059	-		BPHYT_RS18455	0.24	-0.8
4,148,196	-		BPHYT_RS18455	0.61	-1.4
4,148,228	+		BPHYT_RS18455	0.70	-0.1
4,148,229	-		BPHYT_RS18455	0.70	+0.1
4,148,230	+		BPHYT_RS18455	0.70	-0.3
4,148,287	-		BPHYT_RS18455	0.86	-0.3
4,148,350	+				-1.7
4,148,351	-				-0.9
4,148,351	-				-0.7
4,148,368	+				+0.0
4,148,432	-				+0.1
4,148,756	+		BPHYT_RS18460	0.23	-0.6
4,148,757	-		BPHYT_RS18460	0.23	+2.2
4,148,757	-		BPHYT_RS18460	0.23	-0.3
4,148,757	-		BPHYT_RS18460	0.23	-0.7
4,148,757	-		BPHYT_RS18460	0.23	+1.4
4,148,757	-		BPHYT_RS18460	0.23	-1.2
4,148,906	+		BPHYT_RS18460	0.32	+0.5
4,148,906	+		BPHYT_RS18460	0.32	-0.2
4,148,906	+		BPHYT_RS18460	0.32	+0.6
4,148,906	+		BPHYT_RS18460	0.32	+0.1
4,148,906	+		BPHYT_RS18460	0.32	-0.1
4,148,907	-		BPHYT_RS18460	0.32	-2.4
4,149,120	+		BPHYT_RS18460	0.44	-0.2
4,149,120	+		BPHYT_RS18460	0.44	-0.8
4,149,120	+		BPHYT_RS18460	0.44	-1.5
4,149,121	-		BPHYT_RS18460	0.44	-1.0
4,149,121	-		BPHYT_RS18460	0.44	-0.3
4,149,121	-		BPHYT_RS18460	0.44	+0.7
4,149,124	+		BPHYT_RS18460	0.44	+0.0
4,149,124	+		BPHYT_RS18460	0.44	-0.5
4,149,125	-		BPHYT_RS18460	0.44	-0.8
4,149,734	+		BPHYT_RS18460	0.79	-1.2
4,149,735	-		BPHYT_RS18460	0.79	-1.3
4,149,766	+		BPHYT_RS18460	0.81	-0.2
4,149,767	-		BPHYT_RS18460	0.81	-1.8
4,149,789	+		BPHYT_RS18460	0.82	+0.5
4,149,789	+		BPHYT_RS18460	0.82	+1.0
4,149,790	-		BPHYT_RS18460	0.82	-0.9
4,149,790	-		BPHYT_RS18460	0.82	-0.2
4,149,825	+		BPHYT_RS18460	0.84	-0.5
4,149,825	+		BPHYT_RS18460	0.84	-2.1
4,149,826	-		BPHYT_RS18460	0.84	-0.3
4,149,829	+		BPHYT_RS18460	0.84	-0.4
4,149,911	+		BPHYT_RS18460	0.89	-0.2
4,149,912	-		BPHYT_RS18460	0.89	-0.1
4,149,983	+				-0.4
4,149,997	+				-0.6
4,150,071	+				-0.6
4,150,071	+				+1.2
4,150,109	+				+0.5
4,150,109	+				-0.2
4,150,110	-				+0.5
4,150,173	+				+0.6
4,150,173	+				+1.2
4,150,278	-				-0.4
4,150,278	-				-0.6
4,150,437	+		BPHYT_RS18465	0.17	-2.9
4,150,508	+		BPHYT_RS18465	0.23	+0.1
4,150,509	-		BPHYT_RS18465	0.23	+0.8
4,150,707	+		BPHYT_RS18465	0.38	-1.6
4,150,708	-		BPHYT_RS18465	0.39	+1.0
4,150,764	+		BPHYT_RS18465	0.43	-0.7
4,150,764	+		BPHYT_RS18465	0.43	-2.7
4,150,820	+		BPHYT_RS18465	0.47	-0.8
4,150,932	-		BPHYT_RS18465	0.56	-1.7
4,150,972	+		BPHYT_RS18465	0.59	-0.4
4,151,070	+		BPHYT_RS18465	0.67	-1.8