Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05535

Experiment: 36hr PHYTO9 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO9 MOI 1
1,268,919	-		BPHYT_RS05525	0.68	-0.2
1,269,176	+		BPHYT_RS05525	0.88	+0.6
1,269,336	+				-0.8
1,269,336	+				-0.2
1,269,336	+				+1.0
1,269,337	-				+0.2
1,269,337	-				+0.3
1,269,429	-				+0.1
1,269,444	+				-0.2
1,269,444	+				-0.4
1,269,445	-				-0.4
1,269,478	-		BPHYT_RS05530	0.19	-0.6
1,269,509	+		BPHYT_RS05530	0.31	-1.5
1,269,521	+		BPHYT_RS05530	0.35	+0.1
1,269,522	-		BPHYT_RS05530	0.36	-0.0
1,269,624	-		BPHYT_RS05530	0.74	-2.5
1,269,731	-				-0.8
1,269,997	-				-0.2
1,270,370	+		BPHYT_RS05535	0.27	-0.7
1,270,370	+		BPHYT_RS05535	0.27	-1.9
1,270,371	-		BPHYT_RS05535	0.28	-0.7
1,270,398	+		BPHYT_RS05535	0.29	+0.8
1,270,522	-		BPHYT_RS05535	0.36	-0.1
1,270,780	+		BPHYT_RS05535	0.52	-0.8
1,270,781	-		BPHYT_RS05535	0.52	-0.1
1,270,781	-				+0.6
1,270,785	-		BPHYT_RS05535	0.52	-2.0
1,270,809	+		BPHYT_RS05535	0.53	-0.3
1,270,809	+		BPHYT_RS05535	0.53	+0.6
1,270,809	+		BPHYT_RS05535	0.53	-2.4
1,271,328	+		BPHYT_RS05535	0.84	-0.9
1,271,329	-		BPHYT_RS05535	0.84	-0.0
1,271,329	-		BPHYT_RS05535	0.84	-1.2
1,271,496	-				-0.1
1,271,496	-				+0.7
1,271,631	+				-1.5
1,271,631	+				-0.4
1,271,632	-				+0.8
1,271,689	-				+0.2
1,271,771	-				-0.1
1,271,771	-				+0.5
1,271,987	+				-0.9
1,271,988	-				+0.8
1,271,988	-				-0.9
1,272,023	+				-1.3
1,272,024	-				-1.6
1,272,033	+				+0.6
1,272,034	-				+1.4
1,272,174	+				-0.8