Experiment: 36hr PHYTO9 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03940 and BPHYT_RS03945 are separated by 312 nucleotides BPHYT_RS03945 and BPHYT_RS03950 are separated by 357 nucleotides
BPHYT_RS03940: BPHYT_RS03940 - MFS transporter, at 890,855 to 892,339
_RS03940
BPHYT_RS03945: BPHYT_RS03945 - hypothetical protein, at 892,652 to 893,005
_RS03945
BPHYT_RS03950: BPHYT_RS03950 - hypothetical protein, at 893,363 to 895,339
_RS03950
Position (kb) 892
893
894 Strain fitness (log2 ratio) -2
-1
0
1
2 at 891.822 kb on - strand, within BPHYT_RS03940 at 891.869 kb on - strand, within BPHYT_RS03940 at 892.091 kb on + strand, within BPHYT_RS03940 at 892.097 kb on + strand, within BPHYT_RS03940 at 892.249 kb on + strand at 892.337 kb on + strand at 892.338 kb on - strand at 892.365 kb on - strand at 892.559 kb on + strand at 892.568 kb on + strand at 892.568 kb on + strand at 892.569 kb on - strand at 892.569 kb on - strand at 892.597 kb on + strand at 892.598 kb on - strand at 892.653 kb on + strand at 892.653 kb on + strand at 892.654 kb on - strand at 892.654 kb on - strand at 892.654 kb on - strand at 892.823 kb on + strand, within BPHYT_RS03945 at 892.896 kb on - strand, within BPHYT_RS03945 at 893.112 kb on + strand at 893.191 kb on - strand at 893.193 kb on - strand at 893.364 kb on + strand at 893.364 kb on + strand at 893.365 kb on - strand at 893.433 kb on + strand at 893.434 kb on - strand at 893.434 kb on - strand at 893.478 kb on + strand at 893.479 kb on - strand at 893.572 kb on - strand, within BPHYT_RS03950 at 893.857 kb on - strand, within BPHYT_RS03950 at 893.865 kb on + strand, within BPHYT_RS03950 at 893.866 kb on - strand, within BPHYT_RS03950 at 893.866 kb on - strand, within BPHYT_RS03950 at 893.931 kb on + strand, within BPHYT_RS03950 at 893.931 kb on + strand, within BPHYT_RS03950 at 893.932 kb on - strand, within BPHYT_RS03950
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO9 MOI 1 remove 891,822 - BPHYT_RS03940 0.65 -1.4 891,869 - BPHYT_RS03940 0.68 -0.5 892,091 + BPHYT_RS03940 0.83 -0.6 892,097 + BPHYT_RS03940 0.84 -0.1 892,249 + -0.5 892,337 + -0.0 892,338 - +2.2 892,365 - +0.1 892,559 + +0.1 892,568 + -0.3 892,568 + +0.1 892,569 - -0.6 892,569 - -1.1 892,597 + +0.3 892,598 - -0.1 892,653 + -0.3 892,653 + +0.0 892,654 - -0.5 892,654 - +1.4 892,654 - +0.2 892,823 + BPHYT_RS03945 0.48 -2.2 892,896 - BPHYT_RS03945 0.69 -1.5 893,112 + +0.2 893,191 - -1.0 893,193 - -0.9 893,364 + -0.2 893,364 + -1.0 893,365 - -2.6 893,433 + +0.5 893,434 - -0.4 893,434 - +0.9 893,478 + -0.9 893,479 - +0.6 893,572 - BPHYT_RS03950 0.11 -0.3 893,857 - BPHYT_RS03950 0.25 -2.0 893,865 + BPHYT_RS03950 0.25 -0.6 893,866 - BPHYT_RS03950 0.25 -0.6 893,866 - BPHYT_RS03950 0.25 +0.0 893,931 + BPHYT_RS03950 0.29 -1.2 893,931 + BPHYT_RS03950 0.29 -0.2 893,932 - BPHYT_RS03950 0.29 +0.3
Or see this region's nucleotide sequence