Experiment: 36hr PHYTO9 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02810 and BPHYT_RS02815 are separated by 240 nucleotides BPHYT_RS02815 and BPHYT_RS02820 are separated by 112 nucleotides BPHYT_RS02820 and BPHYT_RS02825 are separated by 63 nucleotides
BPHYT_RS02810: BPHYT_RS02810 - cell division protein FtsY, at 629,939 to 631,099
_RS02810
BPHYT_RS02815: BPHYT_RS02815 - methyltransferase, at 631,340 to 631,954
_RS02815
BPHYT_RS02820: BPHYT_RS02820 - phosphopantetheine adenylyltransferase, at 632,067 to 632,582
_RS02820
BPHYT_RS02825: BPHYT_RS02825 - ferredoxin, at 632,646 to 632,903
_RS02825
Position (kb) 631
632 Strain fitness (log2 ratio) -2
-1
0
1
2 at 631.233 kb on + strand at 631.233 kb on + strand at 631.327 kb on + strand at 631.408 kb on + strand at 631.408 kb on + strand, within BPHYT_RS02815 at 631.744 kb on - strand, within BPHYT_RS02815 at 631.830 kb on - strand, within BPHYT_RS02815 at 631.830 kb on - strand, within BPHYT_RS02815 at 631.833 kb on + strand, within BPHYT_RS02815 at 631.834 kb on - strand, within BPHYT_RS02815 at 631.903 kb on + strand at 631.952 kb on + strand at 632.645 kb on + strand at 632.645 kb on + strand at 632.796 kb on - strand, within BPHYT_RS02825 at 632.796 kb on - strand, within BPHYT_RS02825 at 632.819 kb on + strand, within BPHYT_RS02825 at 632.871 kb on + strand, within BPHYT_RS02825 at 632.871 kb on + strand, within BPHYT_RS02825 at 632.907 kb on - strand at 632.935 kb on + strand at 632.935 kb on + strand at 632.936 kb on - strand at 632.936 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO9 MOI 1 remove 631,233 + +0.7 631,233 + -0.2 631,327 + -0.6 631,408 + +0.1 631,408 + BPHYT_RS02815 0.11 -1.3 631,744 - BPHYT_RS02815 0.66 -0.1 631,830 - BPHYT_RS02815 0.80 -2.2 631,830 - BPHYT_RS02815 0.80 +0.2 631,833 + BPHYT_RS02815 0.80 -1.3 631,834 - BPHYT_RS02815 0.80 +1.6 631,903 + -1.8 631,952 + -0.1 632,645 + -0.4 632,645 + -0.2 632,796 - BPHYT_RS02825 0.58 +1.8 632,796 - BPHYT_RS02825 0.58 +2.4 632,819 + BPHYT_RS02825 0.67 +1.5 632,871 + BPHYT_RS02825 0.87 +0.3 632,871 + BPHYT_RS02825 0.87 -0.4 632,907 - -0.8 632,935 + +0.8 632,935 + -0.2 632,936 - -0.1 632,936 - +0.9
Or see this region's nucleotide sequence