Experiment: 36hr PHYTO9 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00700 and BPHYT_RS00705 overlap by 1 nucleotides BPHYT_RS00705 and BPHYT_RS00710 overlap by 14 nucleotides BPHYT_RS00710 and BPHYT_RS00715 are separated by 18 nucleotides
BPHYT_RS00700: BPHYT_RS00700 - branched-chain amino acid ABC transporter permease, at 163,772 to 164,854
_RS00700
BPHYT_RS00705: BPHYT_RS00705 - branched-chain amino acid ABC transporter substrate-binding protein, at 164,854 to 165,588
_RS00705
BPHYT_RS00710: BPHYT_RS00710 - branched-chain amino acid ABC transporter ATPase, at 165,575 to 166,318
_RS00710
BPHYT_RS00715: BPHYT_RS00715 - branched-chain amino acid ABC transporter substrate-binding protein, at 166,337 to 167,515
_RS00715
Position (kb) 165
166
167 Strain fitness (log2 ratio) -2
-1
0
1 at 164.589 kb on + strand, within BPHYT_RS00700 at 164.589 kb on + strand, within BPHYT_RS00700 at 164.590 kb on - strand, within BPHYT_RS00700 at 164.672 kb on + strand, within BPHYT_RS00700 at 164.745 kb on + strand, within BPHYT_RS00700 at 165.040 kb on + strand, within BPHYT_RS00705 at 165.040 kb on + strand, within BPHYT_RS00705 at 165.041 kb on - strand, within BPHYT_RS00705 at 165.515 kb on - strand at 165.553 kb on + strand at 165.553 kb on + strand at 165.554 kb on - strand at 165.912 kb on + strand, within BPHYT_RS00710 at 165.912 kb on + strand, within BPHYT_RS00710 at 165.920 kb on + strand, within BPHYT_RS00710 at 166.262 kb on + strand at 166.262 kb on + strand at 166.648 kb on + strand, within BPHYT_RS00715 at 167.157 kb on - strand, within BPHYT_RS00715 at 167.205 kb on - strand, within BPHYT_RS00715 at 167.206 kb on + strand, within BPHYT_RS00715 at 167.206 kb on + strand, within BPHYT_RS00715 at 167.216 kb on + strand, within BPHYT_RS00715 at 167.283 kb on - strand, within BPHYT_RS00715
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO9 MOI 1 remove 164,589 + BPHYT_RS00700 0.75 -0.5 164,589 + BPHYT_RS00700 0.75 +0.5 164,590 - BPHYT_RS00700 0.76 +0.1 164,672 + BPHYT_RS00700 0.83 -2.0 164,745 + BPHYT_RS00700 0.90 +0.1 165,040 + BPHYT_RS00705 0.25 -1.0 165,040 + BPHYT_RS00705 0.25 -0.4 165,041 - BPHYT_RS00705 0.25 +0.4 165,515 - -0.2 165,553 + -0.8 165,553 + -1.3 165,554 - -1.1 165,912 + BPHYT_RS00710 0.45 +0.1 165,912 + BPHYT_RS00710 0.45 +0.3 165,920 + BPHYT_RS00710 0.46 -2.4 166,262 + -1.6 166,262 + +0.1 166,648 + BPHYT_RS00715 0.26 -0.3 167,157 - BPHYT_RS00715 0.70 +0.6 167,205 - BPHYT_RS00715 0.74 -0.8 167,206 + BPHYT_RS00715 0.74 -0.4 167,206 + BPHYT_RS00715 0.74 -1.4 167,216 + BPHYT_RS00715 0.75 -0.3 167,283 - BPHYT_RS00715 0.80 -0.8
Or see this region's nucleotide sequence