Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00355

Experiment: 36hr PHYTO9 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS00355 and BPHYT_RS00360 are separated by 317 nucleotides BPHYT_RS00355: BPHYT_RS00355 - porin, at 89,804 to 90,931 _RS00355 BPHYT_RS00360: BPHYT_RS00360 - protoporphyrinogen oxidase, at 91,249 to 92,604 _RS00360 Position (kb) 89 90 91Strain fitness (log2 ratio) -2 -1 0 1 2at 88.973 kb on - strandat 89.116 kb on + strandat 89.187 kb on - strandat 89.190 kb on + strandat 89.191 kb on - strandat 89.322 kb on - strandat 89.341 kb on - strandat 89.419 kb on - strandat 89.422 kb on + strandat 89.423 kb on - strandat 89.423 kb on - strandat 89.700 kb on - strandat 89.830 kb on - strandat 89.830 kb on - strandat 90.129 kb on - strand, within BPHYT_RS00355at 90.457 kb on + strand, within BPHYT_RS00355at 90.457 kb on + strand, within BPHYT_RS00355at 90.458 kb on - strand, within BPHYT_RS00355at 90.458 kb on - strand, within BPHYT_RS00355at 90.512 kb on - strand, within BPHYT_RS00355at 90.516 kb on - strand, within BPHYT_RS00355at 90.516 kb on - strand, within BPHYT_RS00355at 90.696 kb on - strand, within BPHYT_RS00355at 90.797 kb on + strandat 90.840 kb on - strandat 90.923 kb on - strandat 91.319 kb on + strandat 91.320 kb on - strandat 91.320 kb on - strandat 91.545 kb on - strand, within BPHYT_RS00360at 91.574 kb on + strand, within BPHYT_RS00360at 91.739 kb on - strand, within BPHYT_RS00360at 91.854 kb on + strand, within BPHYT_RS00360at 91.874 kb on + strand, within BPHYT_RS00360at 91.874 kb on + strand, within BPHYT_RS00360at 91.875 kb on - strand, within BPHYT_RS00360

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO9 MOI 1
remove
88,973 - -0.7
89,116 + +0.1
89,187 - -0.1
89,190 + -2.4
89,191 - -0.6
89,322 - -1.7
89,341 - -1.1
89,419 - -0.1
89,422 + +1.4
89,423 - -0.8
89,423 - +0.5
89,700 - +0.3
89,830 - -1.5
89,830 - -1.5
90,129 - BPHYT_RS00355 0.29 +1.0
90,457 + BPHYT_RS00355 0.58 -0.3
90,457 + BPHYT_RS00355 0.58 +0.1
90,458 - BPHYT_RS00355 0.58 +0.1
90,458 - BPHYT_RS00355 0.58 -0.3
90,512 - BPHYT_RS00355 0.63 -0.3
90,516 - BPHYT_RS00355 0.63 -1.6
90,516 - BPHYT_RS00355 0.63 -1.4
90,696 - BPHYT_RS00355 0.79 +1.2
90,797 + +2.4
90,840 - +1.7
90,923 - -0.9
91,319 + +0.4
91,320 - -1.0
91,320 - -1.9
91,545 - BPHYT_RS00360 0.22 -1.1
91,574 + BPHYT_RS00360 0.24 -0.2
91,739 - BPHYT_RS00360 0.36 +0.0
91,854 + BPHYT_RS00360 0.45 +0.8
91,874 + BPHYT_RS00360 0.46 -1.0
91,874 + BPHYT_RS00360 0.46 +0.1
91,875 - BPHYT_RS00360 0.46 +0.1

Or see this region's nucleotide sequence