Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25710

Experiment: 36hr PHYTO8 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25705 and BPHYT_RS25710 are separated by 231 nucleotidesBPHYT_RS25710 and BPHYT_RS25715 are separated by 153 nucleotides BPHYT_RS25705: BPHYT_RS25705 - aldehyde dehydrogenase, at 1,339,717 to 1,341,228 _RS25705 BPHYT_RS25710: BPHYT_RS25710 - hypothetical protein, at 1,341,460 to 1,341,675 _RS25710 BPHYT_RS25715: BPHYT_RS25715 - transposase, at 1,341,829 to 1,343,262 _RS25715 Position (kb) 1341 1342Strain fitness (log2 ratio) -1 0 1at 1340.691 kb on - strand, within BPHYT_RS25705at 1341.105 kb on - strandat 1341.274 kb on + strandat 1341.275 kb on - strandat 1341.404 kb on - strandat 1341.412 kb on + strandat 1341.616 kb on + strand, within BPHYT_RS25710at 1341.679 kb on + strandat 1342.604 kb on + strand, within BPHYT_RS25715

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO8 MOI 0.1
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1,340,691 - BPHYT_RS25705 0.64 -0.3
1,341,105 - -0.3
1,341,274 + -0.0
1,341,275 - +0.5
1,341,404 - +1.5
1,341,412 + +0.3
1,341,616 + BPHYT_RS25710 0.72 +0.3
1,341,679 + +0.1
1,342,604 + BPHYT_RS25715 0.54 -0.1

Or see this region's nucleotide sequence