Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25190

Experiment: 36hr PHYTO8 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25185 and BPHYT_RS25190 are separated by 53 nucleotidesBPHYT_RS25190 and BPHYT_RS25195 are separated by 49 nucleotides BPHYT_RS25185: BPHYT_RS25185 - peptidase M19, at 1,223,169 to 1,224,140 _RS25185 BPHYT_RS25190: BPHYT_RS25190 - 4-vinyl reductase, at 1,224,194 to 1,224,730 _RS25190 BPHYT_RS25195: BPHYT_RS25195 - N-methylproline demethylase, at 1,224,780 to 1,226,843 _RS25195 Position (kb) 1224 1225Strain fitness (log2 ratio) -1 0 1at 1223.521 kb on - strand, within BPHYT_RS25185at 1224.332 kb on + strand, within BPHYT_RS25190

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO8 MOI 0.1
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1,223,521 - BPHYT_RS25185 0.36 -0.4
1,224,332 + BPHYT_RS25190 0.26 +1.2

Or see this region's nucleotide sequence