Experiment: 36hr PHYTO8 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07055 and BPHYT_RS07060 are separated by 109 nucleotides BPHYT_RS07060 and BPHYT_RS07065 are separated by 48 nucleotides BPHYT_RS07065 and BPHYT_RS07070 are separated by 162 nucleotides
BPHYT_RS07055: BPHYT_RS07055 - sulfotransferase, at 1,595,113 to 1,596,837
_RS07055
BPHYT_RS07060: BPHYT_RS07060 - aldo/keto reductase, at 1,596,947 to 1,597,972
_RS07060
BPHYT_RS07065: BPHYT_RS07065 - 3-ketoacyl-ACP reductase, at 1,598,021 to 1,598,764
_RS07065
BPHYT_RS07070: BPHYT_RS07070 - transcriptional regulator, at 1,598,927 to 1,599,838
_RS07070
Position (kb) 1596
1597
1598 Strain fitness (log2 ratio) -2
-1
0
1 at 1596.277 kb on + strand, within BPHYT_RS07055 at 1596.544 kb on + strand, within BPHYT_RS07055 at 1596.714 kb on + strand at 1596.715 kb on - strand at 1596.901 kb on - strand at 1597.130 kb on + strand, within BPHYT_RS07060 at 1597.307 kb on + strand, within BPHYT_RS07060 at 1597.401 kb on + strand, within BPHYT_RS07060 at 1597.503 kb on - strand, within BPHYT_RS07060 at 1597.658 kb on - strand, within BPHYT_RS07060 at 1598.132 kb on + strand, within BPHYT_RS07065 at 1598.132 kb on + strand, within BPHYT_RS07065 at 1598.132 kb on + strand, within BPHYT_RS07065 at 1598.310 kb on + strand, within BPHYT_RS07065 at 1598.336 kb on - strand, within BPHYT_RS07065 at 1598.439 kb on + strand, within BPHYT_RS07065 at 1598.439 kb on + strand, within BPHYT_RS07065 at 1598.653 kb on - strand, within BPHYT_RS07065 at 1598.653 kb on - strand, within BPHYT_RS07065
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO8 MOI 0.1 remove 1,596,277 + BPHYT_RS07055 0.67 +1.3 1,596,544 + BPHYT_RS07055 0.83 +0.4 1,596,714 + +1.0 1,596,715 - -0.9 1,596,901 - -0.7 1,597,130 + BPHYT_RS07060 0.18 +0.7 1,597,307 + BPHYT_RS07060 0.35 -1.2 1,597,401 + BPHYT_RS07060 0.44 -0.7 1,597,503 - BPHYT_RS07060 0.54 +0.1 1,597,658 - BPHYT_RS07060 0.69 +1.6 1,598,132 + BPHYT_RS07065 0.15 -0.6 1,598,132 + BPHYT_RS07065 0.15 -0.9 1,598,132 + BPHYT_RS07065 0.15 -0.8 1,598,310 + BPHYT_RS07065 0.39 -0.4 1,598,336 - BPHYT_RS07065 0.42 -0.2 1,598,439 + BPHYT_RS07065 0.56 -0.2 1,598,439 + BPHYT_RS07065 0.56 -0.4 1,598,653 - BPHYT_RS07065 0.85 -2.1 1,598,653 - BPHYT_RS07065 0.85 -0.2
Or see this region's nucleotide sequence