Experiment: 36hr PHYTO8 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03970 and BPHYT_RS03975 are separated by 877 nucleotides BPHYT_RS03975 and BPHYT_RS03980 are separated by 87 nucleotides
BPHYT_RS03970: BPHYT_RS03970 - hypothetical protein, at 900,573 to 902,780
_RS03970
BPHYT_RS03975: BPHYT_RS03975 - AraC family transcriptional regulator, at 903,658 to 904,641
_RS03975
BPHYT_RS03980: BPHYT_RS03980 - mannose-1-phosphate guanyltransferase, at 904,729 to 906,276
_RS03980
Position (kb) 903
904
905 Strain fitness (log2 ratio) -2
-1
0
1 at 902.844 kb on + strand at 902.955 kb on - strand at 902.980 kb on + strand at 903.006 kb on - strand at 903.114 kb on + strand at 903.455 kb on + strand at 903.455 kb on + strand at 903.717 kb on + strand at 903.717 kb on + strand at 903.835 kb on + strand, within BPHYT_RS03975 at 903.925 kb on + strand, within BPHYT_RS03975 at 903.947 kb on - strand, within BPHYT_RS03975 at 904.078 kb on + strand, within BPHYT_RS03975 at 904.079 kb on - strand, within BPHYT_RS03975 at 904.079 kb on - strand, within BPHYT_RS03975 at 904.444 kb on - strand, within BPHYT_RS03975 at 905.386 kb on + strand, within BPHYT_RS03980 at 905.386 kb on + strand, within BPHYT_RS03980 at 905.387 kb on - strand, within BPHYT_RS03980 at 905.387 kb on - strand, within BPHYT_RS03980 at 905.512 kb on + strand, within BPHYT_RS03980 at 905.512 kb on + strand, within BPHYT_RS03980 at 905.567 kb on - strand, within BPHYT_RS03980
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO8 MOI 0.1 remove 902,844 + -1.3 902,955 - +0.0 902,980 + -0.2 903,006 - -2.1 903,114 + -0.6 903,455 + +0.6 903,455 + -0.6 903,717 + +0.0 903,717 + +0.3 903,835 + BPHYT_RS03975 0.18 -1.1 903,925 + BPHYT_RS03975 0.27 -0.2 903,947 - BPHYT_RS03975 0.29 -0.3 904,078 + BPHYT_RS03975 0.43 -1.4 904,079 - BPHYT_RS03975 0.43 -0.5 904,079 - BPHYT_RS03975 0.43 -0.7 904,444 - BPHYT_RS03975 0.80 -0.9 905,386 + BPHYT_RS03980 0.42 +0.9 905,386 + BPHYT_RS03980 0.42 +0.9 905,387 - BPHYT_RS03980 0.43 -0.1 905,387 - BPHYT_RS03980 0.43 +0.5 905,512 + BPHYT_RS03980 0.51 +0.4 905,512 + BPHYT_RS03980 0.51 -0.8 905,567 - BPHYT_RS03980 0.54 -0.5
Or see this region's nucleotide sequence