Experiment: 36hr PHYTO8 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21385 and BPHYT_RS21390 are separated by 266 nucleotides BPHYT_RS21390 and BPHYT_RS21395 are separated by 26 nucleotides
BPHYT_RS21385: BPHYT_RS21385 - short-chain dehydrogenase, at 357,489 to 358,082
_RS21385
BPHYT_RS21390: BPHYT_RS21390 - metal-binding protein, at 358,349 to 359,230
_RS21390
BPHYT_RS21395: BPHYT_RS21395 - cytochrome P460, at 359,257 to 360,294
_RS21395
Position (kb) 358
359
360 Strain fitness (log2 ratio) -2
-1
0
1 at 357.935 kb on - strand, within BPHYT_RS21385 at 358.082 kb on + strand at 358.246 kb on - strand at 358.439 kb on + strand, within BPHYT_RS21390 at 358.440 kb on - strand, within BPHYT_RS21390 at 358.608 kb on + strand, within BPHYT_RS21390 at 358.610 kb on + strand, within BPHYT_RS21390 at 358.610 kb on + strand, within BPHYT_RS21390 at 358.610 kb on + strand, within BPHYT_RS21390 at 358.610 kb on + strand, within BPHYT_RS21390 at 358.611 kb on - strand, within BPHYT_RS21390 at 358.611 kb on - strand, within BPHYT_RS21390 at 358.612 kb on + strand, within BPHYT_RS21390 at 358.613 kb on - strand, within BPHYT_RS21390 at 358.613 kb on - strand, within BPHYT_RS21390 at 358.613 kb on - strand, within BPHYT_RS21390 at 358.946 kb on + strand, within BPHYT_RS21390 at 358.947 kb on - strand, within BPHYT_RS21390 at 359.363 kb on - strand, within BPHYT_RS21395 at 359.447 kb on + strand, within BPHYT_RS21395 at 359.448 kb on - strand, within BPHYT_RS21395 at 359.501 kb on + strand, within BPHYT_RS21395 at 359.501 kb on + strand, within BPHYT_RS21395 at 359.502 kb on - strand, within BPHYT_RS21395 at 359.735 kb on + strand, within BPHYT_RS21395 at 359.805 kb on + strand, within BPHYT_RS21395 at 359.805 kb on + strand, within BPHYT_RS21395 at 359.888 kb on + strand, within BPHYT_RS21395 at 360.046 kb on + strand, within BPHYT_RS21395 at 360.047 kb on - strand, within BPHYT_RS21395 at 360.071 kb on + strand, within BPHYT_RS21395 at 360.071 kb on + strand, within BPHYT_RS21395 at 360.072 kb on - strand, within BPHYT_RS21395
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO8 MOI 10 remove 357,935 - BPHYT_RS21385 0.75 -0.8 358,082 + +0.2 358,246 - +0.2 358,439 + BPHYT_RS21390 0.10 -1.2 358,440 - BPHYT_RS21390 0.10 -1.2 358,608 + BPHYT_RS21390 0.29 +0.3 358,610 + BPHYT_RS21390 0.30 -0.1 358,610 + BPHYT_RS21390 0.30 -0.6 358,610 + BPHYT_RS21390 0.30 +0.8 358,610 + BPHYT_RS21390 0.30 +1.2 358,611 - BPHYT_RS21390 0.30 -0.1 358,611 - BPHYT_RS21390 0.30 +0.7 358,612 + BPHYT_RS21390 0.30 +1.1 358,613 - BPHYT_RS21390 0.30 -2.4 358,613 - BPHYT_RS21390 0.30 -0.4 358,613 - BPHYT_RS21390 0.30 +0.9 358,946 + BPHYT_RS21390 0.68 +0.4 358,947 - BPHYT_RS21390 0.68 +0.6 359,363 - BPHYT_RS21395 0.10 -2.0 359,447 + BPHYT_RS21395 0.18 -0.8 359,448 - BPHYT_RS21395 0.18 -0.5 359,501 + BPHYT_RS21395 0.24 -0.1 359,501 + BPHYT_RS21395 0.24 +0.3 359,502 - BPHYT_RS21395 0.24 -0.5 359,735 + BPHYT_RS21395 0.46 -0.3 359,805 + BPHYT_RS21395 0.53 -0.4 359,805 + BPHYT_RS21395 0.53 -0.2 359,888 + BPHYT_RS21395 0.61 -1.0 360,046 + BPHYT_RS21395 0.76 -0.3 360,047 - BPHYT_RS21395 0.76 -2.6 360,071 + BPHYT_RS21395 0.78 +0.5 360,071 + BPHYT_RS21395 0.78 -0.5 360,072 - BPHYT_RS21395 0.79 -2.0
Or see this region's nucleotide sequence