Experiment: 36hr PHYTO8 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20465 and BPHYT_RS20470 are separated by 55 nucleotides BPHYT_RS20470 and BPHYT_RS20475 are separated by 32 nucleotides BPHYT_RS20475 and BPHYT_RS20480 are separated by 107 nucleotides
BPHYT_RS20465: BPHYT_RS20465 - LysR family transcriptional regulator, at 153,559 to 154,443
_RS20465
BPHYT_RS20470: BPHYT_RS20470 - hypothetical protein, at 154,499 to 155,131
_RS20470
BPHYT_RS20475: BPHYT_RS20475 - hypothetical protein, at 155,164 to 156,384
_RS20475
BPHYT_RS20480: BPHYT_RS20480 - hypothetical protein, at 156,492 to 157,259
_RS20480
Position (kb) 155
156
157 Strain fitness (log2 ratio) -2
-1
0
1 at 154.361 kb on - strand at 154.551 kb on + strand at 154.552 kb on - strand at 154.552 kb on - strand at 154.907 kb on - strand, within BPHYT_RS20470 at 155.192 kb on - strand at 155.524 kb on + strand, within BPHYT_RS20475 at 155.974 kb on - strand, within BPHYT_RS20475 at 156.443 kb on + strand at 156.711 kb on + strand, within BPHYT_RS20480 at 156.712 kb on - strand, within BPHYT_RS20480 at 156.861 kb on + strand, within BPHYT_RS20480 at 156.861 kb on + strand, within BPHYT_RS20480 at 156.862 kb on - strand, within BPHYT_RS20480 at 156.862 kb on - strand, within BPHYT_RS20480 at 156.975 kb on + strand, within BPHYT_RS20480 at 156.975 kb on + strand, within BPHYT_RS20480 at 156.982 kb on - strand, within BPHYT_RS20480 at 156.982 kb on - strand, within BPHYT_RS20480 at 156.982 kb on - strand, within BPHYT_RS20480 at 156.982 kb on - strand, within BPHYT_RS20480 at 157.071 kb on + strand, within BPHYT_RS20480 at 157.072 kb on - strand, within BPHYT_RS20480 at 157.134 kb on + strand, within BPHYT_RS20480
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO8 MOI 10 remove 154,361 - -0.5 154,551 + -1.1 154,552 - +0.0 154,552 - -0.3 154,907 - BPHYT_RS20470 0.64 +0.5 155,192 - +0.7 155,524 + BPHYT_RS20475 0.29 -1.2 155,974 - BPHYT_RS20475 0.66 -2.3 156,443 + -0.6 156,711 + BPHYT_RS20480 0.29 -0.4 156,712 - BPHYT_RS20480 0.29 -0.2 156,861 + BPHYT_RS20480 0.48 +0.4 156,861 + BPHYT_RS20480 0.48 -0.6 156,862 - BPHYT_RS20480 0.48 +1.3 156,862 - BPHYT_RS20480 0.48 +0.1 156,975 + BPHYT_RS20480 0.63 +0.7 156,975 + BPHYT_RS20480 0.63 -0.1 156,982 - BPHYT_RS20480 0.64 -0.1 156,982 - BPHYT_RS20480 0.64 +0.4 156,982 - BPHYT_RS20480 0.64 +0.8 156,982 - BPHYT_RS20480 0.64 -0.8 157,071 + BPHYT_RS20480 0.75 +0.8 157,072 - BPHYT_RS20480 0.76 +0.4 157,134 + BPHYT_RS20480 0.84 -1.2
Or see this region's nucleotide sequence