Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11115

Experiment: 36hr PHYTO8 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11110 and BPHYT_RS11115 are separated by 191 nucleotidesBPHYT_RS11115 and BPHYT_RS11120 are separated by 82 nucleotides BPHYT_RS11110: BPHYT_RS11110 - chemotaxis protein CheY, at 2,524,442 to 2,526,415 _RS11110 BPHYT_RS11115: BPHYT_RS11115 - hypothetical protein, at 2,526,607 to 2,526,849 _RS11115 BPHYT_RS11120: BPHYT_RS11120 - ferredoxin--NADP reductase, at 2,526,932 to 2,527,981 _RS11120 Position (kb) 2526 2527Strain fitness (log2 ratio) -1 0 1at 2525.794 kb on - strand, within BPHYT_RS11110at 2525.878 kb on - strand, within BPHYT_RS11110at 2526.177 kb on + strand, within BPHYT_RS11110at 2526.321 kb on + strandat 2526.429 kb on - strandat 2527.015 kb on - strandat 2527.020 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO8 MOI 10
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2,525,794 - BPHYT_RS11110 0.68 -1.0
2,525,878 - BPHYT_RS11110 0.73 -0.8
2,526,177 + BPHYT_RS11110 0.88 -0.3
2,526,321 + +0.4
2,526,429 - +0.8
2,527,015 - -0.9
2,527,020 + +1.0

Or see this region's nucleotide sequence