Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07165

Experiment: 36hr PHYTO8 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07160 and BPHYT_RS07165 overlap by 47 nucleotidesBPHYT_RS07165 and BPHYT_RS07170 overlap by 4 nucleotides BPHYT_RS07160: BPHYT_RS07160 - ABC transporter permease, at 1,625,513 to 1,626,565 _RS07160 BPHYT_RS07165: BPHYT_RS07165 - peptide ABC transporter permease, at 1,626,519 to 1,627,634 _RS07165 BPHYT_RS07170: BPHYT_RS07170 - ABC transporter, at 1,627,631 to 1,629,298 _RS07170 Position (kb) 1626 1627 1628Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1625.523 kb on - strandat 1625.542 kb on - strandat 1625.793 kb on - strand, within BPHYT_RS07160at 1625.820 kb on - strand, within BPHYT_RS07160at 1625.822 kb on + strand, within BPHYT_RS07160at 1626.239 kb on + strand, within BPHYT_RS07160at 1626.519 kb on - strandat 1626.519 kb on - strandat 1626.745 kb on - strandat 1626.997 kb on - strand, within BPHYT_RS07165at 1628.397 kb on - strand, within BPHYT_RS07170

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO8 MOI 10
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1,625,523 - +1.0
1,625,542 - -0.1
1,625,793 - BPHYT_RS07160 0.27 +0.4
1,625,820 - BPHYT_RS07160 0.29 -0.3
1,625,822 + BPHYT_RS07160 0.29 +0.5
1,626,239 + BPHYT_RS07160 0.69 -0.5
1,626,519 - -2.3
1,626,519 - +0.5
1,626,745 - +3.2
1,626,997 - BPHYT_RS07165 0.43 -1.3
1,628,397 - BPHYT_RS07170 0.46 -0.6

Or see this region's nucleotide sequence