Experiment: 36hr PHYTO8 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04290 and BPHYT_RS04295 are separated by 225 nucleotides BPHYT_RS04295 and BPHYT_RS04300 are separated by 56 nucleotides
BPHYT_RS04290: BPHYT_RS04290 - glycosyl transferase family 2, at 981,989 to 983,914
_RS04290
BPHYT_RS04295: BPHYT_RS04295 - ABC transporter, at 984,140 to 984,928
_RS04295
BPHYT_RS04300: BPHYT_RS04300 - family 2 glycosyl transferase, at 984,985 to 987,438
_RS04300
Position (kb) 984
985 Strain fitness (log2 ratio) -1
0
1
2 at 983.714 kb on + strand, within BPHYT_RS04290 at 983.762 kb on + strand at 984.273 kb on - strand, within BPHYT_RS04295 at 984.286 kb on + strand, within BPHYT_RS04295 at 984.324 kb on + strand, within BPHYT_RS04295 at 984.371 kb on + strand, within BPHYT_RS04295 at 984.371 kb on + strand, within BPHYT_RS04295 at 984.371 kb on + strand, within BPHYT_RS04295 at 984.372 kb on - strand, within BPHYT_RS04295 at 984.372 kb on - strand, within BPHYT_RS04295 at 984.478 kb on + strand, within BPHYT_RS04295 at 984.478 kb on + strand, within BPHYT_RS04295 at 984.479 kb on - strand, within BPHYT_RS04295 at 984.623 kb on + strand, within BPHYT_RS04295 at 984.647 kb on + strand, within BPHYT_RS04295 at 984.698 kb on + strand, within BPHYT_RS04295 at 984.698 kb on + strand, within BPHYT_RS04295 at 984.699 kb on - strand, within BPHYT_RS04295 at 984.841 kb on + strand, within BPHYT_RS04295 at 984.841 kb on + strand, within BPHYT_RS04295 at 985.236 kb on + strand, within BPHYT_RS04300 at 985.236 kb on + strand, within BPHYT_RS04300 at 985.237 kb on - strand, within BPHYT_RS04300 at 985.281 kb on + strand, within BPHYT_RS04300 at 985.282 kb on - strand, within BPHYT_RS04300 at 985.282 kb on - strand, within BPHYT_RS04300 at 985.282 kb on - strand, within BPHYT_RS04300 at 985.330 kb on + strand, within BPHYT_RS04300 at 985.537 kb on + strand, within BPHYT_RS04300 at 985.537 kb on + strand, within BPHYT_RS04300 at 985.538 kb on - strand, within BPHYT_RS04300 at 985.540 kb on + strand, within BPHYT_RS04300 at 985.679 kb on + strand, within BPHYT_RS04300 at 985.679 kb on + strand, within BPHYT_RS04300 at 985.681 kb on + strand, within BPHYT_RS04300 at 985.681 kb on + strand, within BPHYT_RS04300 at 985.681 kb on + strand, within BPHYT_RS04300 at 985.682 kb on - strand, within BPHYT_RS04300 at 985.682 kb on - strand, within BPHYT_RS04300 at 985.683 kb on + strand, within BPHYT_RS04300 at 985.683 kb on + strand, within BPHYT_RS04300 at 985.683 kb on + strand, within BPHYT_RS04300 at 985.684 kb on - strand, within BPHYT_RS04300 at 985.684 kb on - strand, within BPHYT_RS04300
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO8 MOI 10 remove 983,714 + BPHYT_RS04290 0.90 +2.6 983,762 + +2.6 984,273 - BPHYT_RS04295 0.17 -0.2 984,286 + BPHYT_RS04295 0.19 +0.1 984,324 + BPHYT_RS04295 0.23 +0.4 984,371 + BPHYT_RS04295 0.29 -0.6 984,371 + BPHYT_RS04295 0.29 +0.1 984,371 + BPHYT_RS04295 0.29 +1.0 984,372 - BPHYT_RS04295 0.29 +0.7 984,372 - BPHYT_RS04295 0.29 +0.5 984,478 + BPHYT_RS04295 0.43 -0.6 984,478 + BPHYT_RS04295 0.43 +0.1 984,479 - BPHYT_RS04295 0.43 +1.1 984,623 + BPHYT_RS04295 0.61 +2.1 984,647 + BPHYT_RS04295 0.64 -0.4 984,698 + BPHYT_RS04295 0.71 +1.2 984,698 + BPHYT_RS04295 0.71 +0.5 984,699 - BPHYT_RS04295 0.71 +2.6 984,841 + BPHYT_RS04295 0.89 -0.6 984,841 + BPHYT_RS04295 0.89 +0.2 985,236 + BPHYT_RS04300 0.10 +0.1 985,236 + BPHYT_RS04300 0.10 +1.6 985,237 - BPHYT_RS04300 0.10 +1.3 985,281 + BPHYT_RS04300 0.12 +0.3 985,282 - BPHYT_RS04300 0.12 +1.2 985,282 - BPHYT_RS04300 0.12 +1.6 985,282 - BPHYT_RS04300 0.12 +0.3 985,330 + BPHYT_RS04300 0.14 +0.1 985,537 + BPHYT_RS04300 0.22 +0.0 985,537 + BPHYT_RS04300 0.22 -0.9 985,538 - BPHYT_RS04300 0.23 +1.2 985,540 + BPHYT_RS04300 0.23 +2.6 985,679 + BPHYT_RS04300 0.28 +0.6 985,679 + BPHYT_RS04300 0.28 +0.5 985,681 + BPHYT_RS04300 0.28 +0.4 985,681 + BPHYT_RS04300 0.28 +2.0 985,681 + BPHYT_RS04300 0.28 +1.0 985,682 - BPHYT_RS04300 0.28 +0.6 985,682 - BPHYT_RS04300 0.28 +0.7 985,683 + BPHYT_RS04300 0.28 +2.6 985,683 + BPHYT_RS04300 0.28 +1.3 985,683 + BPHYT_RS04300 0.28 +2.0 985,684 - BPHYT_RS04300 0.28 +2.2 985,684 - BPHYT_RS04300 0.28 -0.6
Or see this region's nucleotide sequence