Experiment: 36hr PHYTO8 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02200 and BPHYT_RS02205 are separated by 20 nucleotides BPHYT_RS02205 and BPHYT_RS02210 are separated by 55 nucleotides BPHYT_RS02210 and BPHYT_RS02215 are separated by 572 nucleotides
BPHYT_RS02200: BPHYT_RS02200 - hypothetical protein, at 504,722 to 506,923
_RS02200
BPHYT_RS02205: BPHYT_RS02205 - hypothetical protein, at 506,944 to 507,855
_RS02205
BPHYT_RS02210: BPHYT_RS02210 - DeoR family transcriptional regulator, at 507,911 to 509,188
_RS02210
BPHYT_RS02215: BPHYT_RS02215 - hypothetical protein, at 509,761 to 510,210
_RS02215
Position (kb) 507
508
509
510 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 507.061 kb on + strand at 507.061 kb on + strand, within BPHYT_RS02205 at 507.062 kb on - strand, within BPHYT_RS02205 at 507.333 kb on - strand, within BPHYT_RS02205 at 507.333 kb on - strand, within BPHYT_RS02205 at 507.339 kb on + strand, within BPHYT_RS02205 at 507.340 kb on - strand, within BPHYT_RS02205 at 507.340 kb on - strand, within BPHYT_RS02205 at 507.825 kb on + strand at 508.021 kb on - strand at 508.023 kb on - strand at 508.372 kb on - strand, within BPHYT_RS02210 at 508.372 kb on - strand, within BPHYT_RS02210 at 508.425 kb on + strand, within BPHYT_RS02210 at 508.473 kb on + strand, within BPHYT_RS02210 at 508.474 kb on - strand, within BPHYT_RS02210 at 508.474 kb on - strand, within BPHYT_RS02210 at 508.529 kb on + strand, within BPHYT_RS02210 at 508.530 kb on - strand, within BPHYT_RS02210 at 508.683 kb on + strand, within BPHYT_RS02210 at 508.684 kb on - strand, within BPHYT_RS02210 at 508.684 kb on - strand, within BPHYT_RS02210 at 508.774 kb on - strand, within BPHYT_RS02210 at 508.774 kb on - strand, within BPHYT_RS02210 at 508.774 kb on - strand, within BPHYT_RS02210 at 509.015 kb on - strand, within BPHYT_RS02210 at 509.034 kb on + strand, within BPHYT_RS02210 at 509.508 kb on + strand at 509.705 kb on + strand at 509.706 kb on + strand at 509.706 kb on + strand at 509.707 kb on - strand at 509.707 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO8 MOI 10 remove 507,061 + +1.2 507,061 + BPHYT_RS02205 0.13 -0.1 507,062 - BPHYT_RS02205 0.13 +0.8 507,333 - BPHYT_RS02205 0.43 -0.9 507,333 - BPHYT_RS02205 0.43 +1.0 507,339 + BPHYT_RS02205 0.43 -0.8 507,340 - BPHYT_RS02205 0.43 -0.1 507,340 - BPHYT_RS02205 0.43 +0.0 507,825 + +0.4 508,021 - +0.4 508,023 - -0.4 508,372 - BPHYT_RS02210 0.36 +1.3 508,372 - BPHYT_RS02210 0.36 -0.6 508,425 + BPHYT_RS02210 0.40 +1.2 508,473 + BPHYT_RS02210 0.44 +4.6 508,474 - BPHYT_RS02210 0.44 -0.5 508,474 - BPHYT_RS02210 0.44 +0.8 508,529 + BPHYT_RS02210 0.48 -2.4 508,530 - BPHYT_RS02210 0.48 -0.3 508,683 + BPHYT_RS02210 0.60 +1.3 508,684 - BPHYT_RS02210 0.60 -0.9 508,684 - BPHYT_RS02210 0.60 +0.8 508,774 - BPHYT_RS02210 0.68 -0.0 508,774 - BPHYT_RS02210 0.68 +0.5 508,774 - BPHYT_RS02210 0.68 +0.0 509,015 - BPHYT_RS02210 0.86 +2.6 509,034 + BPHYT_RS02210 0.88 -0.4 509,508 + -0.9 509,705 + -0.9 509,706 + -1.3 509,706 + +1.6 509,707 - +0.5 509,707 - +0.6
Or see this region's nucleotide sequence