Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00265

Experiment: 36hr PHYTO8 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00255 and BPHYT_RS00260 are separated by 80 nucleotidesBPHYT_RS00260 and BPHYT_RS00265 overlap by 8 nucleotidesBPHYT_RS00265 and BPHYT_RS00270 overlap by 4 nucleotidesBPHYT_RS00270 and BPHYT_RS00275 are separated by 37 nucleotides BPHYT_RS00255: BPHYT_RS00255 - amino acid ABC transporter, at 65,601 to 66,764 _RS00255 BPHYT_RS00260: BPHYT_RS00260 - amino acid ABC transporter, at 66,845 to 67,681 _RS00260 BPHYT_RS00265: BPHYT_RS00265 - branched-chain amino acid ABC transporter substrate-binding protein, at 67,674 to 69,488 _RS00265 BPHYT_RS00270: BPHYT_RS00270 - branched-chain amino acid ABC transporter, at 69,485 to 70,186 _RS00270 BPHYT_RS00275: BPHYT_RS00275 - urease subunit beta, at 70,224 to 70,910 _RS00275 Position (kb) 67 68 69 70Strain fitness (log2 ratio) -2 -1 0 1 2at 66.686 kb on - strandat 66.842 kb on + strandat 66.842 kb on + strandat 66.843 kb on - strandat 66.843 kb on - strandat 66.843 kb on - strandat 66.843 kb on - strandat 66.844 kb on + strandat 66.845 kb on - strandat 66.927 kb on + strandat 66.928 kb on - strandat 66.994 kb on + strand, within BPHYT_RS00260at 66.995 kb on - strand, within BPHYT_RS00260at 67.094 kb on + strand, within BPHYT_RS00260at 67.236 kb on - strand, within BPHYT_RS00260at 67.236 kb on - strand, within BPHYT_RS00260at 67.260 kb on + strand, within BPHYT_RS00260at 67.261 kb on - strand, within BPHYT_RS00260at 67.592 kb on + strand, within BPHYT_RS00260at 67.594 kb on + strand, within BPHYT_RS00260at 67.851 kb on + strandat 67.851 kb on + strandat 67.854 kb on - strandat 67.854 kb on - strandat 67.854 kb on - strandat 67.854 kb on - strandat 67.902 kb on + strand, within BPHYT_RS00265at 67.904 kb on + strand, within BPHYT_RS00265at 67.918 kb on + strand, within BPHYT_RS00265at 67.918 kb on + strand, within BPHYT_RS00265at 67.919 kb on - strand, within BPHYT_RS00265at 67.923 kb on - strand, within BPHYT_RS00265at 68.058 kb on - strand, within BPHYT_RS00265at 68.286 kb on + strand, within BPHYT_RS00265at 68.367 kb on + strand, within BPHYT_RS00265at 68.377 kb on - strand, within BPHYT_RS00265at 68.413 kb on + strand, within BPHYT_RS00265at 68.532 kb on + strand, within BPHYT_RS00265at 68.533 kb on - strand, within BPHYT_RS00265at 68.798 kb on - strand, within BPHYT_RS00265at 69.074 kb on + strand, within BPHYT_RS00265at 69.075 kb on - strand, within BPHYT_RS00265at 69.202 kb on + strand, within BPHYT_RS00265at 69.203 kb on - strand, within BPHYT_RS00265at 69.286 kb on + strand, within BPHYT_RS00265at 69.315 kb on - strandat 69.315 kb on - strandat 69.453 kb on + strandat 69.453 kb on + strandat 69.454 kb on - strandat 69.455 kb on + strandat 69.456 kb on - strandat 69.525 kb on - strandat 69.732 kb on - strand, within BPHYT_RS00270at 69.732 kb on - strand, within BPHYT_RS00270at 70.094 kb on + strand, within BPHYT_RS00270at 70.095 kb on - strand, within BPHYT_RS00270at 70.306 kb on + strand, within BPHYT_RS00275at 70.307 kb on - strand, within BPHYT_RS00275at 70.460 kb on - strand, within BPHYT_RS00275at 70.460 kb on - strand, within BPHYT_RS00275at 70.460 kb on - strand, within BPHYT_RS00275

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO8 MOI 10
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66,686 - -0.7
66,842 + -0.4
66,842 + +0.3
66,843 - +0.9
66,843 - +0.4
66,843 - +0.8
66,843 - -0.3
66,844 + +0.7
66,845 - +0.0
66,927 + -1.4
66,928 - -0.8
66,994 + BPHYT_RS00260 0.18 +0.1
66,995 - BPHYT_RS00260 0.18 -0.8
67,094 + BPHYT_RS00260 0.30 +0.1
67,236 - BPHYT_RS00260 0.47 +0.1
67,236 - BPHYT_RS00260 0.47 +0.4
67,260 + BPHYT_RS00260 0.50 +0.5
67,261 - BPHYT_RS00260 0.50 +0.2
67,592 + BPHYT_RS00260 0.89 +0.4
67,594 + BPHYT_RS00260 0.89 +0.1
67,851 + -0.8
67,851 + -0.8
67,854 - +0.2
67,854 - +2.0
67,854 - +1.1
67,854 - +1.7
67,902 + BPHYT_RS00265 0.13 +2.7
67,904 + BPHYT_RS00265 0.13 +1.0
67,918 + BPHYT_RS00265 0.13 -0.5
67,918 + BPHYT_RS00265 0.13 +0.3
67,919 - BPHYT_RS00265 0.13 -0.1
67,923 - BPHYT_RS00265 0.14 +0.3
68,058 - BPHYT_RS00265 0.21 +0.2
68,286 + BPHYT_RS00265 0.34 +0.8
68,367 + BPHYT_RS00265 0.38 -0.4
68,377 - BPHYT_RS00265 0.39 +2.1
68,413 + BPHYT_RS00265 0.41 -1.8
68,532 + BPHYT_RS00265 0.47 -1.4
68,533 - BPHYT_RS00265 0.47 +0.4
68,798 - BPHYT_RS00265 0.62 -0.1
69,074 + BPHYT_RS00265 0.77 +2.1
69,075 - BPHYT_RS00265 0.77 +0.3
69,202 + BPHYT_RS00265 0.84 -0.1
69,203 - BPHYT_RS00265 0.84 -2.2
69,286 + BPHYT_RS00265 0.89 +1.2
69,315 - +0.4
69,315 - +0.1
69,453 + +0.6
69,453 + +0.1
69,454 - -1.3
69,455 + -1.0
69,456 - -0.4
69,525 - -0.4
69,732 - BPHYT_RS00270 0.35 +0.2
69,732 - BPHYT_RS00270 0.35 +1.9
70,094 + BPHYT_RS00270 0.87 +1.0
70,095 - BPHYT_RS00270 0.87 -1.1
70,306 + BPHYT_RS00275 0.12 -0.5
70,307 - BPHYT_RS00275 0.12 +1.0
70,460 - BPHYT_RS00275 0.34 -0.9
70,460 - BPHYT_RS00275 0.34 -0.1
70,460 - BPHYT_RS00275 0.34 +0.4

Or see this region's nucleotide sequence