Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08535

Experiment: 36hr PHYTO8 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS08530 and BPHYT_RS08535 overlap by 26 nucleotidesBPHYT_RS08535 and BPHYT_RS08540 are separated by 334 nucleotides BPHYT_RS08530: BPHYT_RS08530 - mannose-1-phosphate guanylyltransferase (GDP), at 1,951,355 to 1,952,572 _RS08530 BPHYT_RS08535: BPHYT_RS08535 - flavin reductase, at 1,952,547 to 1,953,137 _RS08535 BPHYT_RS08540: BPHYT_RS08540 - GntR family transcriptional regulator, at 1,953,472 to 1,954,197 _RS08540 Position (kb) 1952 1953 1954Strain fitness (log2 ratio) -1 0 1 2 3at 1952.403 kb on - strand, within BPHYT_RS08530at 1952.561 kb on - strandat 1953.380 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO8 MOI 10
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1,952,403 - BPHYT_RS08530 0.86 -0.1
1,952,561 - -0.7
1,953,380 + +2.9

Or see this region's nucleotide sequence