Experiment: 36hr PHYTO8 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02480 and BPHYT_RS02485 are separated by 573 nucleotides BPHYT_RS02485 and BPHYT_RS02490 are separated by 105 nucleotides
BPHYT_RS02480: BPHYT_RS02480 - alkaline phosphatase, at 562,332 to 563,102
_RS02480
BPHYT_RS02485: BPHYT_RS02485 - membrane protein, at 563,676 to 564,464
_RS02485
BPHYT_RS02490: BPHYT_RS02490 - iron ABC transporter substrate-binding protein, at 564,570 to 565,685
_RS02490
Position (kb) 563
564
565 Strain fitness (log2 ratio) -1
0
1 at 563.144 kb on + strand at 563.197 kb on - strand at 563.204 kb on + strand at 563.205 kb on - strand at 563.286 kb on + strand at 563.546 kb on + strand at 563.638 kb on + strand at 563.639 kb on - strand at 563.652 kb on + strand at 563.667 kb on + strand at 563.691 kb on - strand at 564.285 kb on + strand, within BPHYT_RS02485 at 564.286 kb on - strand, within BPHYT_RS02485 at 564.570 kb on - strand at 564.586 kb on + strand at 564.596 kb on - strand at 564.596 kb on - strand at 564.734 kb on + strand, within BPHYT_RS02490 at 564.734 kb on + strand, within BPHYT_RS02490 at 564.735 kb on - strand, within BPHYT_RS02490 at 564.738 kb on + strand, within BPHYT_RS02490 at 564.932 kb on + strand, within BPHYT_RS02490 at 564.933 kb on + strand at 565.006 kb on - strand, within BPHYT_RS02490 at 565.149 kb on + strand, within BPHYT_RS02490 at 565.459 kb on - strand, within BPHYT_RS02490
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO8 MOI 10 remove 563,144 + +0.1 563,197 - -1.4 563,204 + +0.2 563,205 - +0.2 563,286 + +0.6 563,546 + -0.4 563,638 + -0.2 563,639 - +0.6 563,652 + +0.3 563,667 + +1.0 563,691 - -1.3 564,285 + BPHYT_RS02485 0.77 -1.2 564,286 - BPHYT_RS02485 0.77 -0.4 564,570 - -0.9 564,586 + -0.2 564,596 - +0.1 564,596 - -1.6 564,734 + BPHYT_RS02490 0.15 +0.0 564,734 + BPHYT_RS02490 0.15 +0.0 564,735 - BPHYT_RS02490 0.15 +0.7 564,738 + BPHYT_RS02490 0.15 -0.1 564,932 + BPHYT_RS02490 0.32 +0.3 564,933 + +0.0 565,006 - BPHYT_RS02490 0.39 -0.2 565,149 + BPHYT_RS02490 0.52 +0.3 565,459 - BPHYT_RS02490 0.80 -0.6
Or see this region's nucleotide sequence