Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32945

Experiment: 36hr PHYTO7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS32940 and BPHYT_RS32945 are separated by 341 nucleotidesBPHYT_RS32945 and BPHYT_RS32950 are separated by 21 nucleotides BPHYT_RS32940: BPHYT_RS32940 - MFS transporter, at 2,969,791 to 2,970,540 _RS32940 BPHYT_RS32945: BPHYT_RS32945 - integrase, at 2,970,882 to 2,971,757 _RS32945 BPHYT_RS32950: BPHYT_RS32950 - transposase, at 2,971,779 to 2,972,948 _RS32950 Position (kb) 2970 2971 2972Strain fitness (log2 ratio) -1 0 1at 2970.107 kb on - strand, within BPHYT_RS32940at 2970.423 kb on + strand, within BPHYT_RS32940at 2970.492 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO7 MOI 1
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2,970,107 - BPHYT_RS32940 0.42 -0.3
2,970,423 + BPHYT_RS32940 0.84 +0.1
2,970,492 + -1.0

Or see this region's nucleotide sequence