Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31075

Experiment: 36hr PHYTO7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS31065 and BPHYT_RS31070 are separated by 4 nucleotidesBPHYT_RS31070 and BPHYT_RS31075 are separated by 19 nucleotidesBPHYT_RS31075 and BPHYT_RS31080 are separated by 167 nucleotides BPHYT_RS31065: BPHYT_RS31065 - polysaccharide biosynthesis protein, at 2,524,830 to 2,526,194 _RS31065 BPHYT_RS31070: BPHYT_RS31070 - acetyltransferase, at 2,526,199 to 2,526,840 _RS31070 BPHYT_RS31075: BPHYT_RS31075 - hypothetical protein, at 2,526,860 to 2,527,996 _RS31075 BPHYT_RS31080: BPHYT_RS31080 - mannose-1-phosphate guanyltransferase, at 2,528,164 to 2,529,597 _RS31080 Position (kb) 2526 2527 2528Strain fitness (log2 ratio) -1 0 1at 2527.056 kb on - strand, within BPHYT_RS31075

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO7 MOI 1
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2,527,056 - BPHYT_RS31075 0.17 +0.9

Or see this region's nucleotide sequence