Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28245

Experiment: 36hr PHYTO7 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS28240 and BPHYT_RS28245 are separated by 36 nucleotidesBPHYT_RS28245 and BPHYT_RS28250 are separated by 97 nucleotides BPHYT_RS28240: BPHYT_RS28240 - L-rhamnonate dehydratase, at 1,892,939 to 1,894,117 _RS28240 BPHYT_RS28245: BPHYT_RS28245 - MFS transporter, at 1,894,154 to 1,895,482 _RS28245 BPHYT_RS28250: BPHYT_RS28250 - 3-oxoacyl-ACP reductase, at 1,895,580 to 1,896,332 _RS28250 Position (kb) 1894 1895 1896Strain fitness (log2 ratio) -1 0 1 2at 1893.367 kb on - strand, within BPHYT_RS28240at 1893.678 kb on - strand, within BPHYT_RS28240at 1893.749 kb on - strand, within BPHYT_RS28240at 1894.173 kb on - strandat 1894.227 kb on - strandat 1894.584 kb on + strand, within BPHYT_RS28245at 1895.569 kb on - strandat 1896.440 kb on + strandat 1896.440 kb on + strandat 1896.441 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO7 MOI 1
remove
1,893,367 - BPHYT_RS28240 0.36 +1.9
1,893,678 - BPHYT_RS28240 0.63 +1.7
1,893,749 - BPHYT_RS28240 0.69 +0.7
1,894,173 - +0.2
1,894,227 - +0.0
1,894,584 + BPHYT_RS28245 0.32 -1.3
1,895,569 - -0.2
1,896,440 + +0.3
1,896,440 + +1.7
1,896,441 - +0.7

Or see this region's nucleotide sequence