Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27265
Experiment: 36hr PHYTO7 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO7 MOI 1 |
---|---|---|---|---|---|
remove | |||||
1,690,156 | + | BPHYT_RS27260 | 0.15 | +0.4 | |
1,690,748 | - | +1.8 | |||
1,691,083 | - | BPHYT_RS27265 | 0.22 | -1.0 | |
1,691,234 | - | BPHYT_RS27265 | 0.40 | -0.3 | |
1,691,450 | + | BPHYT_RS27265 | 0.66 | -0.1 | |
1,691,451 | - | BPHYT_RS27265 | 0.66 | -1.2 | |
1,691,549 | + | BPHYT_RS27265 | 0.78 | -2.1 | |
1,691,549 | + | BPHYT_RS27265 | 0.78 | +0.2 | |
1,691,713 | + | +1.3 | |||
1,691,766 | + | +0.1 | |||
1,691,880 | + | -0.5 | |||
1,692,039 | - | +1.2 | |||
1,692,407 | + | +0.2 | |||
1,692,474 | - | BPHYT_RS27270 | 0.13 | +0.3 | |
1,692,646 | - | BPHYT_RS27270 | 0.52 | +1.7 |
Or see this region's nucleotide sequence